Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01312 ATGGTTGAGTTTCACTTCCAATTCACAACTATAATTCCCTTCATCCTCCTCCTTCTATTCCTAAACCATGTTGAATCACAATCATCCATGCAACCACTTCCTACTAACATATCTCATCATAAATGGGAACCTTCTTTTGCAATCACAGTTGGTGCTATCTTATGTCTACTTCTTTTCCTAGGAATCATCTTTTTCTACATCAGAAACTGTGTTGAATCACACATCATAGTCACAACAAGAACCAATCCTACCACACAAATTCCATGTTCATGTTCACAAGGTATCAACAAGGAACTTCTCAACACTTTCCCGATCCTATTTTACTCAATAATCAAGGACCTTAAAACAGGTAAAGGACCATTGGAATGTGCTGTTTGTTTAACTGATTTCAAAGAACATGATACCTTAAGATTATTACCAAAATGCAACCATGTTTTTCACCCTCAATGCATTGATTCATGGTTAGCTTCACATGTTACATGTCCTGTTTGTAGAGCAAATCTTAACCAAGATTCTTGTCAAGTTGCAATGATCATCCCAACCCATTTCAACAATGAACAAAATTGTGAGGAAAATTCTGAAACCACACCAGAAATCACCCTCACTCATGATGATTCCACAGATcaaaaccaaaaccaaaaccaaaaccaaaTTGTTGATGACATGAACAACAAAAAAGAAAGTATCAATTGTGATGATGGGTATGGATCAAAATTGAAACTTTTGAGGTCAAATTCAACAGGACATTCATTGGTTGAACAAGTGAAGTGTGTTGAAAGGTACACACTGATGTTACCAGAGGATGTGAGGAGGTACATTTTGGTTAACAATAGAAAAAGTTTTCAACTTTCTATGAACAGCAACATGGTTAAGGGGTCATGTTGGAGTGACAGTGAAGAGAGCAGTGTANNNNNNNNNNNNNNNNNNNNNNNGTAG 936 0.3472 MVEFHFQFTTIIPFILLLLFLNHVESQSSMQPLPTNISHHKWEPSFAITVGAILCLLLFLGIIFFYIRNCVESHIIVTTRTNPTTQIPCSCSQGINKELLNTFPILFYSIIKDLKTGKGPLECAVCLTDFKEHDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCQVAMIIPTHFNNEQNCEENSETTPEITLTHDDSTDQNQNQNQNQIVDDMNNKKESINCDDGYGSKLKLLRSNSTGHSLVEQVKCVERYTLMLPEDVRRYILVNNRKSFQLSMNSNMVKGSCWSDSEESSVXXXXXXXX 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01312 311 Pfam Ring finger domain 122 165 IPR001841 -
Car08g01312 311 PANTHER RING FINGER DOMAIN-CONTAINING 220 293 - -
Car08g01312 311 SUPERFAMILY RING/U-box 122 171 - -
Car08g01312 311 MobiDBLite consensus disorder prediction 189 216 - -
Car08g01312 311 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 216 - -
Car08g01312 311 PANTHER RING FINGER DOMAIN-CONTAINING 3 216 - -
Car08g01312 311 SMART ring_2 123 164 IPR001841 -
Car08g01312 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 175 IPR013083 -
Car08g01312 311 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Car08g01312 311 CDD RING-H2_EL5_like 122 165 - -
Car08g01312 311 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 220 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01312 Car-Chr8 19705647 19707345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01312 5 274 Rapid Response to Elicitors AT3G05200 34.420 9.81e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01312 K10664 - gmx:100782532 303.523