Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01309 ATGGGAGTAAAGAATTTGTGGGACATCCTCGAATCCTGCAAGAAAACGGTTCCACTTCACCATCTCCAGAACAAAAGGGTGTGTGTGGATCTCTCGTGTTGGATGGTTCAGCTTCAGAGTGTGAGTAAGTCTCATTCTTGTTTGAAAGAGAAAGTTCATCTTAGAGGACTCTTTCATCGTCTTAGAGCTCTCATTTCCCTCAATTGTACTGTCGTTTTAGTTTCAGATGGATCAATTCCTGCCATTAAATTATCGACTTATAGGCGTCGCTTAAACAATGGAAAGGAGGTAGCCCAAAATGAAACTAACCTACAGAAAGTGACATCATTACGGAGAAACATGGGGTCTGAGTTTTCCTGCATGATTAAAGAGGCGAAATTCTTGGGTTTGGCTCTCGGCGTTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAACTTTGAATCATTATGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTTTTTGGTGCAAGGACAGTGTACAGGGATATCTGCCTCGGAGACGGCGGATATGTTGTAAGTTATGAGATGGCAGACATTGAAAGTAAACTTGGATTCGGACGAGACTCGTTGATTGCTCTTTCTTTGCTTCTTGGCAGTGACTATTATCAAGGCGTTCACGGTCTTGGTCCGGATTCAGCATGTCAGATAGTTAAATCAATTGGGGACAAATTTGTTCTAAAAAAATTTGCTTCTGAAGGACTTGGATGGTTGAAAAAACGAAAAGGAAGTGGAAATAATTTAGGAAGGGATGATGCAATTTTACAAGTGATTGATGCTTATTTGAAGCCAAAATGCCACTCAGCAGATTCAGATATTGTTCTCAGGACTTTTGCTCAGTATCCATTTCAACGCCTTAAACTCCATGAAATATGTGCTGAATTCTTTGAATGGCCTTCAGAGAGAACAGATGGCTATATTCTTCCTTGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGATTAACTTCGTCTGAACTCGGACTGAACCTTCCTTTACATGAGATCCCTGTAAAGTGTCCTGTCTCAGAAATCGTTAAGAGTCGACGGGTTCAAGGGAGAGAATGCTATGAGGTTTCTTGGAAAGACATGGATGGGCTTGAAACTTCAACAGTACCTGCAGATCTTATAGAAAGTGCTTGTCCTGAGAAGATTTCGGAATTCGAGGAGAAAAAAGCTCTTAAGAAACAAAATGTTCAAAAAAGAAGACCAAAGAAAAAGGAAACTATGTCTTCAATGGCTGAACTTGATCTAAAACTGCAGAATTTATTATTAGATGATAATTTGGCAGACCAAACCAACCAAAATTCCTCTGATTCTATAGAAAGAATATTAAGAGAAACAAGTGCTATGGCTGAAGCTGTTCTTAATACACAAGATTTGGTGCTATCACATGATGATGACATAGAACATGATGCTTGGATTCAGAATATCAACAAAAACATATCAAGCAATGAAGATGTTTCATGTAAAGATAAAAATGTTGTCATTGATCTTCTAAGTCCTTCTCCACTTAAGCCATCAAATACTTCAAAATTCCATTCATCAAGTGATCAACATATTGAAGTGATTAATTTGAGTGATTCAGAAAATGAAATGTCAATTGAACACAAGCAGAAAGCTAAAGAGCTGAGATTGTTCTTAGCAAGTATTAGAAATGAAAATCATTGA 1719 0.3805 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLQSVSKSHSCLKEKVHLRGLFHRLRALISLNCTVVLVSDGSIPAIKLSTYRRRLNNGKEVAQNETNLQKVTSLRRNMGSEFSCMIKEAKFLGLALGVSCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVSYEMADIESKLGFGRDSLIALSLLLGSDYYQGVHGLGPDSACQIVKSIGDKFVLKKFASEGLGWLKKRKGSGNNLGRDDAILQVIDAYLKPKCHSADSDIVLRTFAQYPFQRLKLHEICAEFFEWPSERTDGYILPCIAERDLRRFANLRLTSSELGLNLPLHEIPVKCPVSEIVKSRRVQGRECYEVSWKDMDGLETSTVPADLIESACPEKISEFEEKKALKKQNVQKRRPKKKETMSSMAELDLKLQNLLLDDNLADQTNQNSSDSIERILRETSAMAEAVLNTQDLVLSHDDDIEHDAWIQNINKNISSNEDVSCKDKNVVIDLLSPSPLKPSNTSKFHSSSDQHIEVINLSDSENEMSIEHKQKAKELRLFLASIRNENH 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01309 572 CDD H3TH_XPG-like 203 246 - -
Car08g01309 572 CDD PIN_GEN1 2 198 - -
Car08g01309 572 SUPERFAMILY Chromo domain-like 357 411 IPR016197 -
Car08g01309 572 Coils Coil 564 572 - -
Car08g01309 572 CDD CD_CSD 358 406 - -
Car08g01309 572 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Car08g01309 572 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Car08g01309 572 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Car08g01309 572 Pfam XPG N-terminal domain 1 92 IPR006085 GO:0004518
Car08g01309 572 SMART chromo_7 355 409 IPR000953 -
Car08g01309 572 SMART xpgineu 130 200 IPR006086 GO:0004518
Car08g01309 572 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Car08g01309 572 Gene3D - 2 199 - -
Car08g01309 572 Gene3D - 355 423 - -
Car08g01309 572 Gene3D - 201 255 - -
Car08g01309 572 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 463 - -
Car08g01309 572 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Car08g01309 572 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Car08g01309 572 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Car08g01309 572 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Car08g01309 572 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Car08g01309 572 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 463 IPR006084 -
Car08g01309 572 SMART xpgn3 1 97 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01309 Car-Chr8 19657442 19663713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01309 1 236 Core DNA Replication Machinery Family AT5G26680 25.581 6.79e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01309 K15338 - gmx:100806919 892.878