Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01308 ATGGGATTTGAGATAGAAGAAAAACCAAAACCAAAACCAAAATATAGAAAAGGATTATGGTCACCTGAAGAAGATAATAAGCTCAGAAATTATATCCTTAAATATGGTCATAACTGCTGGAGCTCTGTTCCCATTAAGGCAGGGTTGCAAAGGAATGGAAAGAGTTGCAGATTAAGGTGGATAAACTATCTAAGACCAGGATTAAAGAGAGGTGTGCTTAGCAAACATGAAGAAGATACAATCATCACCCTTCACCACATGTTAGGAAACAAGTGGTCTCAGATAGCACAACAATTACCAGGAAGGACTGACAACGAAATAAAGAATTATTGGCATTCATATTTGAAAAAGAAAGTCGTAGAAACTAATCAAATTAAGTATGCTACATCAAGCTCAGAATCAATTGACTCTTTAGTCTCTACTCTAAAAAATTCAAGTCAAGATCCTAATTATGCGGTGTTAGAAAATATTGATAAATCAACACCTAAAACACACTCTAATCACTCTATTTCACATAATTACAATACTACCAATGATGTTTGTCTGAACTCTCTACCAAAATTATTATTTGCTGAGTGGCTTTCACTAGATCATGTAAATGGTGGCAGCTCTATAAATTCAAATGATACTTTAGTATTGGGAAATGGATATGATCAAAACTCATCTTTTCAAGACGATGTTATGCAAATTCAAGAAGGGCAATTTTGTGATAATTATCATGATAGTTTAATTCAAAATCCAGCCAATGAGGTATACTATTCACAACTTCAAATGTCAAATCAAGTGGATGAAAATGACTTGGTCCACTCTATGAATAATGATGCAATTTATGTATGA 837 0.3333 MGFEIEEKPKPKPKYRKGLWSPEEDNKLRNYILKYGHNCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVLSKHEEDTIITLHHMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKKVVETNQIKYATSSSESIDSLVSTLKNSSQDPNYAVLENIDKSTPKTHSNHSISHNYNTTNDVCLNSLPKLLFAEWLSLDHVNGGSSINSNDTLVLGNGYDQNSSFQDDVMQIQEGQFCDNYHDSLIQNPANEVYYSQLQMSNQVDENDLVHSMNNDAIYV 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01308 278 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Car08g01308 278 Gene3D - 73 139 - -
Car08g01308 278 SMART sant 16 66 IPR001005 -
Car08g01308 278 SMART sant 69 117 IPR001005 -
Car08g01308 278 PANTHER MYB DOMAIN PROTEIN 55 9 273 - -
Car08g01308 278 Gene3D - 17 69 - -
Car08g01308 278 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Car08g01308 278 Pfam Myb-like DNA-binding domain 74 115 IPR001005 -
Car08g01308 278 CDD SANT 20 64 IPR001005 -
Car08g01308 278 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Car08g01308 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Car08g01308 278 PANTHER MYB TRANSCRIPTION FACTOR 9 273 - -
Car08g01308 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Car08g01308 278 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Car08g01308 278 CDD SANT 74 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01308 Car-Chr8 19651312 19654748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01308 10 195 MYB Transcription Factor Family AT5G52260 55.851 4.88e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car08g01308 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01308 K09422 - gmx:100803537 362.844