Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01307 ATGGGAAAAACAAAATGTTGTGATCAACATGGAGTGAAGAGAGGAGGTTGGACACCAGAAGAAAATGAAACATTTGTTGAATATATTAACAACCATCGACATGGAAGTTGGAGAACACTCCCTAAACTAGCAGGttcatgtttcctGTGGGCCGTTATAGCATCCCAACTACCAAGAAGAACAAACAACGAAATAAAGAACTACTGGAACACACAACTGAAGAAGCGTCTCCCTCAGTCGGGAAGCATGATGCATAGTGTTGTCAAACCCGAATCTCCTTCAAAATACCATACGGCGCAATGGAAAAGTGTGAGAGTTGAGGCCGAGACAAGGTTATCAATGGAATCATCATTGCTTACTTCATTACCAACAAGTGAAAGTAAAACACGTTCTCATTACTCTCTTCAACTTTGGAATTCTGAAGTCGGAAATTTGTTTAGAATGATCAAAGGAAATAGTGTAGTGTGTCGAAGTAATAATGTCTCAGAAGCATCATTGTCGTCGAAATTGGAATCATGTTCAGATGTCACATTGCAGGTTAAAAACATCGAAAGTGGTACCTTGGTGAACAAGTCACAAGAAGAACAAGGTATTGGATATAAACCAAAGCTTGAAGATGGCACAATAGAGTCAAAATCAAGCTATTATGAATTACTTGATTCATCTGATTCTGCATTAAATATATTTCTAGATATGAATGATGATCAAATAGGATCTTCAGGACAAAATGAAAGTTTTCTCGATACACTTTATGGTAAATTTGACTAA 768 0.3672 MGKTKCCDQHGVKRGGWTPEENETFVEYINNHRHGSWRTLPKLAGSCFLWAVIASQLPRRTNNEIKNYWNTQLKKRLPQSGSMMHSVVKPESPSKYHTAQWKSVRVEAETRLSMESSLLTSLPTSESKTRSHYSLQLWNSEVGNLFRMIKGNSVVCRSNNVSEASLSSKLESCSDVTLQVKNIESGTLVNKSQEEQGIGYKPKLEDGTIESKSSYYELLDSSDSALNIFLDMNDDQIGSSGQNESFLDTLYGKFD 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01307 255 SMART sant 13 75 IPR001005 -
Car08g01307 255 ProSiteProfiles Myb-like domain profile. 9 73 IPR001005 -
Car08g01307 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 77 IPR017930 -
Car08g01307 255 SUPERFAMILY Homeodomain-like 9 78 IPR009057 -
Car08g01307 255 CDD SANT 17 71 IPR001005 -
Car08g01307 255 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 50 236 - -
Car08g01307 255 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 45 - -
Car08g01307 255 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 50 236 - -
Car08g01307 255 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 45 - -
Car08g01307 255 Pfam Myb-like DNA-binding domain 14 72 IPR001005 -
Car08g01307 255 Gene3D - 12 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01307 Car-Chr8 19645915 19648151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01307 1 237 MYB Transcription Factor Family AT3G61250 37.086 5.79e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car08g01307 Myb_DNA-binding 3.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01307 K09422 - qsu:111999004 196.052