Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01300 ATGGAACAACAACAACATTATAGAAGAATGGTTATATTGGGAGAAAATGAAAGAGTCACTATTGAATTGTTTTATCCTATTATCAACGGTTTTTATGAAATGATTCCTACTATTCCTGTTAATAGAAACATCATTTTCTCACATATGTGTATCCAAGATGGTCGCTATTTTCTTTTTGAAAGCAACAACAACGAGTTTCTTCTTAGAATAAAAACTCAAGATATCATACCAATTTATGGTCAAGGTGGCCACTACGTTATTGGAGAAAATAACATCAATCAACTTAATCAAATTCCAACACAAAGAACAAATGTCGAAGCTACCCGATGCTCTGTTAAGAATCTTGAAAGAATTACAATTGACCAGAGTCTTGAAAGAATTACAATTGATGAAGAAATTACTGCTGATAATTTAACATGTTCCATATGCCTTGAGGAGTTTTTACTTGGATCGGAAGCAATTCGTTTGTCTAGTACATGTTCACACATTTATCATCAAAATTGTATTATAAGGTGGCTCATTAGATCAAACACATGTCCTTTGTGCCGTAGACCTATCTCATGTATTCTCTTGTTTTCTTAA 582 0.3247 MEQQQHYRRMVILGENERVTIELFYPIINGFYEMIPTIPVNRNIIFSHMCIQDGRYFLFESNNNEFLLRIKTQDIIPIYGQGGHYVIGENNINQLNQIPTQRTNVEATRCSVKNLERITIDQSLERITIDEEITADNLTCSICLEEFLLGSEAIRLSSTCSHIYHQNCIIRWLIRSNTCPLCRRPISCILLFS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01300 193 CDD RING-H2_PA-TM-RING 139 183 - -
Car08g01300 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 185 - -
Car08g01300 193 ProSiteProfiles Zinc finger RING-type profile. 140 183 IPR001841 -
Car08g01300 193 Pfam Ring finger domain 139 183 IPR001841 -
Car08g01300 193 SUPERFAMILY RING/U-box 122 188 - -
Car08g01300 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 188 IPR013083 -
Car08g01300 193 SMART ring_2 140 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01300 Car-Chr8 19496672 19497253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01300 138 183 C3H Transcription Factor Family AT3G60080 54.348 1.32e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01300 - K22378 cam:101490108 89.7373