Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01284 atgCTTTTCGTTTATTTTTCAGCAGATCAGTCACGGGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACAACTAAGTATTACTGCACTGTCATTGATGCCCCCGGACACAGAGATTTCATTAAGAACATGATTACTGAAACATCCCAAGCTGATTGTGTTGTCCTTATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGACGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACTCCCAAGTACTCTAATGCTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTACAACCCAGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGAGCTCTACAAACCTTGATTGGTACAAAGGTCCAACCCTTCTTGAAGCCCTTGACCAAATTAATGAACCTAAGAGGCCATCAGACAAGACCCTCCGGTTACCGCTTCAGGATGTCTACAAGATTGGAGGAATTGGTACTGTGCCTGTGGGGCATGTCGAGACCGATGGTAGGTCAAAGCGTTTTGGTTTTGTCAATTTCAAAAATCCAAACAATGTTGCTAATGTTGTGGAGGCATTGAATGGGTGTCCTTGGGAAGTGGACCATGGGATCAGATTTTTGGTGGAGGAAACTCTCCAGCCTTTGTCGTGGCAGCTGTTGCAGCCCTTATGA 774 0.4354 MLFVYFSADQSRERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITETSQADCVVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSNARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIESSTNLDWYKGPTLLEALDQINEPKRPSDKTLRLPLQDVYKIGGIGTVPVGHVETDGRSKRFGFVNFKNPNNVANVVEALNGCPWEVDHGIRFLVEETLQPLSWQLLQPL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01284 257 PRINTS GTP-binding elongation factor signature 93 102 IPR000795 GO:0003924|GO:0005525
Car08g01284 257 PRINTS GTP-binding elongation factor signature 13 21 IPR000795 GO:0003924|GO:0005525
Car08g01284 257 PRINTS GTP-binding elongation factor signature 49 60 IPR000795 GO:0003924|GO:0005525
Car08g01284 257 PRINTS GTP-binding elongation factor signature 33 43 IPR000795 GO:0003924|GO:0005525
Car08g01284 257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 194 IPR027417 -
Car08g01284 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 229 IPR000504 GO:0003723
Car08g01284 257 PANTHER TRANSLATION FACTOR 10 203 - -
Car08g01284 257 Gene3D Translation factors 174 226 - -
Car08g01284 257 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 10 203 - -
Car08g01284 257 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 175 IPR000795 GO:0003924|GO:0005525
Car08g01284 257 SUPERFAMILY RNA-binding domain, RBD 201 232 IPR035979 GO:0003676
Car08g01284 257 Pfam Elongation factor Tu GTP binding domain 8 167 IPR000795 GO:0003924|GO:0005525
Car08g01284 257 Gene3D - 3 171 IPR027417 -
Car08g01284 257 CDD EF1_alpha 12 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01284 Car-Chr8 18854232 18855349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01284 12 202 Eukaryotic Initiation Factors Gene Family AT5G60390 96.335 9.15e-136 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01284 K03231 - thj:104826361 380.948