Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01275 ATGTTTGCAGAAGTTTGCATTCCAAAAGAAGTAATTGATAGATTGTTTTGTGCTAGGTGTCATGTTCCTTGGCATCCTAGTGTTGGTTGTGAGGAGTTTCAGAAACTTAATATGGATGAGAGAGGGATTCAAGATCTTCTTGTTAGAGAGCTTGCTAATCAAAAAAAGTGGAAAAGGTGTCCCCAATGCAAATTCTATGTTGAAAAAATTGAAGGTTGTTTGCATATCACATGTAGTGATGTAGGTCAGTTGCATCTAGATTGA 264 0.3674 MFAEVCIPKEVIDRLFCARCHVPWHPSVGCEEFQKLNMDERGIQDLLVRELANQKKWKRCPQCKFYVEKIEGCLHITCSDVGQLHLD 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01275 87 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 12 79 - -
Car08g01275 87 Gene3D - 26 82 - -
Car08g01275 87 SUPERFAMILY RING/U-box 41 79 - -
Car08g01275 87 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 12 79 IPR031127 GO:0004842|GO:0016567
Car08g01275 87 ProSiteProfiles TRIAD supradomain profile. 1 87 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01275 Car-Chr8 18344345 18345461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01275 16 78 C3H Transcription Factor Family AT2G19610 36.508 4.58e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01275 K11975 - mtr:MTR_1g105450 128.642