Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01249 ATGGCCGAGGAGGAACCAAAGGTTCTCAACTATGTTCCAGAGGTTATATTGAAGAAGAGGAAAAATAGTGAAGCCTGGGCATTAAGAAAAAAGGCACAATTCCAGCAAAAAGGTTTCCAATTCAGGAAGTCCAAGGACTTCATAAAAAAACCTGAGGATTTCATTTTTGAATATCGCAACAGGGAGGTGGACCTTCTTAGAATGAAACGGAGGCTCAAGGGAGTCAAGAGGAAACTGCCCGAACCATCGACCCCAAGCAAGCCCATAATAGTCATTCGTATACAGGGGAAACATGACATGCATCCTACAACCAGAAAACATTTATTGAGTTTGGGATTGAGAAGAATATTCAGTGCTGTCTTAGTGAAGCCAACTGATGGAGTAATGGCCAAGCTGCTGAGAGTGGAACCATATGTTACCTACGGATATCCGAATCTTAAAAGCATAAAGGAGCTAATTTACAAGAAGGGGCATGCAAAAATAGATAAGCAGAAAGTTCCTTTGACAGATAATAACATTATTGAGCAGGAATTAGGGAAGTTTGGTATTGTATGCATAGAAGACATTGTGCATCAAATTGACAATGTTGGTCCACACTTTAAGGAAGTTGTAAGATTTATGTGGCCCTTTGAACTCAACAAACCAGCAGATGGATTGAAAGGTTCGAAAACCCGATTCAAGGTTGGTGGAGATGCAGGGAACCGGGAGGATCTCATCAATGAGCTCATGAATAAAATGAATTAG 744 0.4086 MAEEEPKVLNYVPEVILKKRKNSEAWALRKKAQFQQKGFQFRKSKDFIKKPEDFIFEYRNREVDLLRMKRRLKGVKRKLPEPSTPSKPIIVIRIQGKHDMHPTTRKHLLSLGLRRIFSAVLVKPTDGVMAKLLRVEPYVTYGYPNLKSIKELIYKKGHAKIDKQKVPLTDNNIIEQELGKFGIVCIEDIVHQIDNVGPHFKEVVRFMWPFELNKPADGLKGSKTRFKVGGDAGNREDLINELMNKMN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01249 247 PANTHER 60S RIBOSOMAL PROTEIN L7 3 247 IPR039699 -
Car08g01249 247 TIGRFAM uL30_euk: 60S ribosomal protein uL30 13 247 IPR005998 GO:0000463|GO:0003735|GO:0022625
Car08g01249 247 CDD Ribosomal_L7_archeal_euk 89 247 IPR035808 -
Car08g01249 247 SUPERFAMILY Ribosomal protein L30p/L7e 90 247 IPR036919 -
Car08g01249 247 Pfam Ribosomal protein L30p/L7e 90 139 IPR016082 -
Car08g01249 247 Pfam Ribosomal L30 N-terminal domain 12 73 IPR012988 -
Car08g01249 247 Gene3D - 192 247 IPR036919 -
Car08g01249 247 Gene3D - 89 191 IPR036919 -
Car08g01249 247 PANTHER 60S RIBOSOMAL PROTEIN L7-1 3 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01249 Car-Chr8 17079833 17084609 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01249 1 247 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 53.600 3.54e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01249 K02937 - gmx:100306107 372.859