Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01247 ATGTTAGAAACTATGGAATATAATAGTCAATATACTTATTCATCAGAAGCTGGAGAAGCTAGTCCACCAGCTACCATAAGAAAGAAGAAAAACAAGAAAACAAAAAGGTTTAGTGATGAACAAATCAAATCAATGGAATTTATGTTTGAGACTGAGACAAGGCTTGAACCAAGAAGGAAGTTGCAGTTAGCAACAGAGCTTGGATTGCATTCAAGACAAGTTGCTATATGGTTTCAAAACAAGAGAGATAGATGGAAATTAAAACAAGAGAGATAG 276 0.3406 MLETMEYNSQYTYSSEAGEASPPATIRKKKNKKTKRFSDEQIKSMEFMFETETRLEPRRKLQLATELGLHSRQVAIWFQNKRDRWKLKQER 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01247 91 PRINTS Lambda-repressor HTH signature 68 84 IPR000047 GO:0003677
Car08g01247 91 PRINTS Lambda-repressor HTH signature 59 68 IPR000047 GO:0003677
Car08g01247 91 MobiDBLite consensus disorder prediction 1 19 - -
Car08g01247 91 Pfam Homeodomain 33 86 IPR001356 GO:0003677
Car08g01247 91 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Car08g01247 91 MobiDBLite consensus disorder prediction 1 37 - -
Car08g01247 91 CDD homeodomain 36 89 IPR001356 GO:0003677
Car08g01247 91 SUPERFAMILY Homeodomain-like 8 89 IPR009057 -
Car08g01247 91 SMART HOX_1 29 91 IPR001356 GO:0003677
Car08g01247 91 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 19 89 IPR045224 GO:0003700
Car08g01247 91 Gene3D - 14 91 - -
Car08g01247 91 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Car08g01247 91 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 19 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01247 Car-Chr8 17073554 17073829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01247 13 89 Homeobox Transcription Factor Family AT2G46680 64.634 6.46e-27 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Car08g01247 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01247 K09338 - gmx:100811208 107.457