Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01235 ATGTCGTCTCCGGGATTCAACGGTGGTGTTGGATCATCGGACTTTTACTCCGGCAGATCATCAAACACCACCAACAATAACGACAACCTCCATCATCCATCTCTGTACCGAACCCAACAACAACTTCCCCCAATTTTTCTAGATCCTTCTTCACAGATCCAACGTCAACCTCAACCGTTCATCGGAAAACGCACTTTAGCAGAATTCCAGACCcaacaaaatcaaacctacaacaacaacagcagcaacaacaacaacaaTCACGTTCTCTCAAACCTTTTACTTCGTTCTGTAAAACCAAGAACAAATTTTCAGTTTCAAAACAATTCCCCTTTATCTTTCTCTCTACCTGAATTACAAAACCCTTTATCATTTAACTACCACACGCAACGTTTAGGTGTTCCTTTACTTCACCAACTTCGTCCTCAACCAATTAACCCCAATTTTAACTACCGAACCTCTAATTTAGGTCCGGGTATTTTAAACCGGGTTCAAAATCAAAACACTGAACCGGAAAAAAAGATCAGTGATAACGTGCTTCTACAAGAATTAGAGAAACAGCTTCTAGAAGATAACGACGAAGGTGAAGAAGCAGATGCAGCTTCAGTTATAACAACAAGTGAATGGTCAGAAACTTATCAGAATCTAATTGGGCCTGGGCCGACTCAGGCTCAGAAACCAGcttcttcatcgcctacttcttctaccacgtcatcaacttcttcatctgcggcttcACCGGCTTCAGTTTGTTCCAAACAAACCCTAATTGAAGCCGCGTCCGCGATTTCCGAAGGTAAAAACGACGTCGCTTTAGAGATCTTAAACCGTTTTGTTCAGAATTTGAATCCGAATGCAAATTCGGATCAACGTTTAACTAATTGCATGGTTTCTGCTCTTAAATCGAGGATGAATTCTGTTGAAAATCCTCCACCTGTTGTTGAACTGTTCAGTAAAGAACACGCTGAGTCGACTCGGTTATTGTTAGAAAACTCGGTTTGTTTCAGCGTTGGTTTCATGGCTTCGAATCTCGCGATTTTGGAAGCAGCATTTGATCACAACGGTTTCTGTGTGGTGGATTTTGAAATTGGACAGGGAAAACAGTATATTAATCTTCTGCACGCGCTTAAAGCGCGTGACGTTTTACCAGGTTTTACATTGAAGATAGTTGCGGTTGCGGCGGAGAACGGCGGCGGAGACGAAAGTTTTAAAGCGGTTGGCGAGATGTTGAGTCGTCAAGCGGAGAAGTTGAGAATCGCGTTTGAGTTTCGTATTGTAACCATTTCTCAGAGGCGAGTTAACGAGTTGACTCGCGAGTTATTAGGTTGTCACTCGGATGAAACGCTTGTTGTTAATTTCGCGTTTAAACTGAATCGTATTCCTGATGAAAGCGTTTCAACGGAGAATCCACGCGACGAGCTTTTAAGGCGCGTGAAAAAACTTTCCCCGCGCGTGGTAACAATTTTGGAGCAAGAAATGAACGGTAATACTGCGCCGTTTTTGGCTAGAGTGGCTGAGTCATGGTCTTATTACAGTGCTTTGTATGACTCGGTTGAGTCTGTGTTAGGAAAAGATAACTCGGACCGAGTTATGATTGAAGAAGGACTGAGTCGGAAGCTATGCAACTCGGTGGCTTGTGAAGGTAGAGATCGTGTTGAACGGTGTGAGGTTTTCGGAAAATGGCGCGCGCGTATGAGTATGGCGGGGTTTATGTTGAAACCAATGAGTCAAAACGTTGCTGAGTCAATAAAGTCGCGACTCGCTGTGGGAAATAATAACCGAGTCAACACGGGACTCAGTGTGAAAGAAGAGAACGGAGGGATTTGTTTTGGTTGGATGGGAAGAACACTCACCGTTGCTTCTGCTTGGCGTTAG 1875 0.4144 MSSPGFNGGVGSSDFYSGRSSNTTNNNDNLHHPSLYRTQQQLPPIFLDPSSQIQRQPQPFIGKRTLAEFQTQQNQTYNNNSSNNNNNHVLSNLLLRSVKPRTNFQFQNNSPLSFSLPELQNPLSFNYHTQRLGVPLLHQLRPQPINPNFNYRTSNLGPGILNRVQNQNTEPEKKISDNVLLQELEKQLLEDNDEGEEADAASVITTSEWSETYQNLIGPGPTQAQKPASSSPTSSTTSSTSSSAASPASVCSKQTLIEAASAISEGKNDVALEILNRFVQNLNPNANSDQRLTNCMVSALKSRMNSVENPPPVVELFSKEHAESTRLLLENSVCFSVGFMASNLAILEAAFDHNGFCVVDFEIGQGKQYINLLHALKARDVLPGFTLKIVAVAAENGGGDESFKAVGEMLSRQAEKLRIAFEFRIVTISQRRVNELTRELLGCHSDETLVVNFAFKLNRIPDESVSTENPRDELLRRVKKLSPRVVTILEQEMNGNTAPFLARVAESWSYYSALYDSVESVLGKDNSDRVMIEEGLSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGFMLKPMSQNVAESIKSRLAVGNNNRVNTGLSVKEENGGICFGWMGRTLTVASAWR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01235 624 Pfam GRAS domain family 253 624 IPR005202 -
Car08g01235 624 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 55 623 IPR005202 -
Car08g01235 624 ProSiteProfiles GRAS family profile. 243 624 IPR005202 -
Car08g01235 624 MobiDBLite consensus disorder prediction 213 247 - -
Car08g01235 624 PANTHER SCARECROW-LIKE PROTEIN 8 55 623 IPR030013 -
Car08g01235 624 MobiDBLite consensus disorder prediction 1 33 - -
Car08g01235 624 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01235 Car-Chr8 16682643 16684714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01235 22 624 GRAS Transcription Factor Family AT5G52510 47.634 1.16e-154 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Car08g01235 GRAS 8.7e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01235 - - aip:107644872 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01235 08 16682643 16684714 Car04g01173 04 12013135 12015502 PCT