Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01202 ATGGCTCAACTTGCTTGGGAAAAGATTGGAATCTACAGAGGTGGGATCATCCCCGTTTTATTCCAAAGGGTTCCTTGCAAAAAGCATGGAGGGGCTAGGTTCAGTGTGAATGGGAGGGACTACTTTGAACTAGTGTTAATCAGCAATATAGGTGGTGCTGGATCAATCCAATCTGTGTCCATTAAAGGCTCCAAATCTAGTTGA 204 0.4412 MAQLAWEKIGIYRGGIIPVLFQRVPCKKHGGARFSVNGRDYFELVLISNIGGAGSIQSVSIKGSKSS 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01202 67 Pfam Expansin C-terminal domain 33 65 IPR007117 -
Car08g01202 67 PRINTS Expansin signature 42 63 IPR002963 GO:0009664
Car08g01202 67 PRINTS Expansin signature 30 42 IPR002963 GO:0009664
Car08g01202 67 PRINTS Expansin signature 6 19 IPR002963 GO:0009664
Car08g01202 67 PANTHER EXPANSIN-A15 1 66 IPR002963 GO:0009664
Car08g01202 67 PANTHER EXPANSIN 1 66 - -
Car08g01202 67 SUPERFAMILY Barwin-like endoglucanases 1 49 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01202 Car-Chr8 13859742 13860345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01202 1 66 Expansin Gene Family AT1G20190 78.788 5.77e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01202 - - gmx:100783913 129.028