Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01190 ATGGACAATGATGGTTGGGATCTATCAGCCATTGTGCGTAGTTGCAAAGCTACCACCTTTACTAATCCCACCACCGTTTTTGAAACTCCCACCCCCAACACCTCGACCAATAACGCTAGATCTCCTCTTAAACCAACTGATTTCATAGAGCTAGAAAAATTGACAACCATCATAAATCCCAATACCACTATctccacccccacctccacctccacctccacctccacctccgcctccGCCGCCAATATCCTTAAACCCACATTCACTATCGGCACTCCCGCTTTCACTTACACCAGTGTTCATAACACCAATCAAAATTCAACTTTTTATGATGTCTCAACACTCGGGATACAACAAGAAATGCAATTAAATCCACAAACTGATTTATTCACAAGGGTGTATATTCCTACAAAGGTTAACTGCATTAAAGTTACTAGTGCTCATTTTGATCTTGCATACAATCACCCATCACTTCAACAACAATCCCAAAGAGAACTCAATCAACTACCGATTCAAGTAACACAAATCAATTCTGTGGTTTTACCAAATACACGTCCACAACGAAAAAAATACAGATCAAAATATAGAAAAAATCAGCAGATGAATCTGGTTTGCCATGTGAATACTGAGAAGCTCTTAGAAGATCCATGGGCATGGAGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGAATTACTACAAATGTAGCAGTGCCAGAGATTGTGCAGCAAGAAAGCTTGTAGATAAAAGCACTTCCAAAGAGGACATTTTTGTTGTGACATATGTAGGACAACACAATCATGAAAAACCGGTTAATCGGACCTCTCGAAACCAGGCTTTAAATACTCTCTTTAGAATGAAATATAAGTAA 882 0.3605 MDNDGWDLSAIVRSCKATTFTNPTTVFETPTPNTSTNNARSPLKPTDFIELEKLTTIINPNTTISTPTSTSTSTSTSASAANILKPTFTIGTPAFTYTSVHNTNQNSTFYDVSTLGIQQEMQLNPQTDLFTRVYIPTKVNCIKVTSAHFDLAYNHPSLQQQSQRELNQLPIQVTQINSVVLPNTRPQRKKYRSKYRKNQQMNLVCHVNTEKLLEDPWAWRKYGQKPIKGSPYPRNYYKCSSARDCAARKLVDKSTSKEDIFVVTYVGQHNHEKPVNRTSRNQALNTLFRMKYK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01190 293 SUPERFAMILY WRKY DNA-binding domain 207 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car08g01190 293 Gene3D WRKY domain 199 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car08g01190 293 ProSiteProfiles WRKY domain profile. 208 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car08g01190 293 SMART WRKY_cls 213 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car08g01190 293 Pfam WRKY DNA -binding domain 214 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car08g01190 293 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 4 280 - -
Car08g01190 293 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 280 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01190 Car-Chr8 13589632 13595531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01190 192 279 WRKY Transcription Factor Family AT5G52830 61.364 2.45e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car08g01190 WRKY 1.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01190 K13425 - cam:101499081 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01190 08 13589632 13595531 Car04g01161 04 11835117 11836737 PCT