Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01189 ATGGATACTGATGATTGTGATCTATTAGCCATTGTGCGTAGCTGCAAAGCTACCACCATTACTAATCACACCACCGTTTTTGAAACTCCCACCCCCACCAATAACACTATTTTCCCTCAAAATCCCACACCTTACTTTGAAGATTTTACTTTTACTCAAGGAAATAGCTCAACCCCTTGTGTTCCTCTTAAACCAAATGATTTTATAGAGCTAGAAAAATTGAAAATTatccccacccccactactatccccacccccatcaccatcACTAATAATAATAGTGTTTATGACACAAATCAAAATTCGACCTTTTATAATTTTCCAACACTCATGGAACAACAACAGATGCAATTAAATCTCAATCAATATGAGTTGGATCTAACGGAACAGACTAAACTTTCATATTATGATGAGCCGAGATTTGAATTTCCATCAGTAGAATCACCTATATTTAATTTCGAACATGCTTCGAATAGAGTTAATTGCATTACAATCACCACCGATCATTTTGATCTTGCATACAATCACCCATCACTTCAACTCCAACCACACCAAGAGCTCAATCAACTACCAATTCAAGAACCCCAAACCAATTCTATGGTTTTAGCAAATGCAAATCCACAACCAAATAAACAAAGATCGAGAAAGAGAAAAAATCAACCATTGAAAATGATTTGCGAGATGAATGCACAGAAGCTCTTAGAAGATCCATGGGCATGGAGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGAGCTACTACAGATGTAGCAGTGCTAGAGAATGTGGAGCAAAAAAATTAGTAGAAAAAAGTCATACCAATGAGAACACTTTTCTTGTGACATATACAGGAGAACACAATCATGAAAAACCAATTAACCGAATCATGGTGAGCACACCCTCTTGGAACAAGCCACCGGAGACCCGTCTACTTCCTGCTGGAGTAGTCGGGCCGTCCCAAAATATAGTTTCGCCTAATGCGATGTTGTGGTTTGATCAACCGGAGAGCGGCAACTCTCCGATTCACGGCGGCAATGCTCAAGTGAACAATGATGACAACATTGTTTTGGTACCCAACATGATGGCTGTGTCGGAGACTTCCTTAATGAACTTTAACCCCCTTAATATTGGCAATATTCCCTTTGTTGAGTCAAACCCTTAA 1173 0.3717 MDTDDCDLLAIVRSCKATTITNHTTVFETPTPTNNTIFPQNPTPYFEDFTFTQGNSSTPCVPLKPNDFIELEKLKIIPTPTTIPTPITITNNNSVYDTNQNSTFYNFPTLMEQQQMQLNLNQYELDLTEQTKLSYYDEPRFEFPSVESPIFNFEHASNRVNCITITTDHFDLAYNHPSLQLQPHQELNQLPIQEPQTNSMVLANANPQPNKQRSRKRKNQPLKMICEMNAQKLLEDPWAWRKYGQKPIKGSPYPRSYYRCSSARECGAKKLVEKSHTNENTFLVTYTGEHNHEKPINRIMVSTPSWNKPPETRLLPAGVVGPSQNIVSPNAMLWFDQPESGNSPIHGGNAQVNNDDNIVLVPNMMAVSETSLMNFNPLNIGNIPFVESNP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01189 390 Pfam WRKY DNA -binding domain 235 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car08g01189 390 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 307 IPR044810 GO:0003700
Car08g01189 390 SUPERFAMILY WRKY DNA-binding domain 230 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car08g01189 390 SMART WRKY_cls 234 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car08g01189 390 ProSiteProfiles WRKY domain profile. 229 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car08g01189 390 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 5 307 - -
Car08g01189 390 Gene3D WRKY domain 222 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01189 Car-Chr8 13472840 13474926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01189 213 359 WRKY Transcription Factor Family AT5G52830 44.898 3.15e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car08g01189 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01189 K13425 - cam:105851597 389.037