Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car08g01187 | ATGGATTCCGATCTTGAAGTGAAAGCCATAGAGGCTTTTGTCGAAGACCACTTTGAGTTAGCGGTTGAACTTCTCACTCAAGCAATTCATCTTGACCCTAACAAACCTGAACTCTATGCTGATCGTGCCCAAGCCAATATCAAACTCAATAACTTCACTGAGGCTGTTGCTGATGCAAACAAAGCAATTGAGTTGAATCCTTCTCTGTCAAAGTCATATTTGCGCAAAGGTATTGCATGCATGAAGCTTGAGGAATATCAGACTGCTAAGACCGCTTTAGAGACGGGTGCCTCATTGGCTGATGACAAATCAAGATTTGTTAATTTGATCAAAGAATGTGATAAACTCATTGCAGAAGAATCTTACGCCGAACCTGCACAGGAAAAGACTACAACACAGGGTGCAACTCTGAATGCTGTTCATCAAGAAAATGATCTTGTAGAGAAGCCGATAATTGTGGTTGCTAAACCTAAATATAGGCATGAATATTACCAGAAACCTGAAGAAGTGGTTGTAACTATATTTGCAAAGGGGGTATCAAAGGAAAGCATTACTATGGAGTTCGGTGAACAAATACTAAGTGTCACCATTGATGTCCCTAATGAAGATGCATATGTCTTTCAATCTCGCTTATTTGGAAAGATCATACCTTCCAAATGCCGGTATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGCGAAAGTCGAACCTATTCACTGGAAATCCCTAGAATTCACCAGAGAAACCGCAGTTGCACCAAGGACTATTGCTTCTTCAGTTACTGGAACTCAAAGACCCACATACCCATCCTCAAAACCAACAAGAGTAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAGTGAGGAGAAAAGTGAAAAACTTGATGGCGATGCGGCATTGAACAAATTTTTCCGGGAAATATATCATGATGCTGATGAGGATACAAGAAGAGCAATGAAAAAATCATTTGTGGAGTCTAATGGAACAGTGCTGTCAACAAACTGGAAGGAAGTGGGAACTAAGAAGGTTGAGGGAAGTCCACCTGATGGCATGGAGTTGAGGAAATGGGAATATTAA | 1080 | 0.4065 | MDSDLEVKAIEAFVEDHFELAVELLTQAIHLDPNKPELYADRAQANIKLNNFTEAVADANKAIELNPSLSKSYLRKGIACMKLEEYQTAKTALETGASLADDKSRFVNLIKECDKLIAEESYAEPAQEKTTTQGATLNAVHQENDLVEKPIIVVAKPKYRHEYYQKPEEVVVTIFAKGVSKESITMEFGEQILSVTIDVPNEDAYVFQSRLFGKIIPSKCRYEVLSTKIEIRLAKVEPIHWKSLEFTRETAVAPRTIASSVTGTQRPTYPSSKPTRVDWDKLEAQVKSEEKSEKLDGDAALNKFFREIYHDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELRKWEY | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car08g01187 | 359 | ProSiteProfiles | TPR repeat profile. | 36 | 69 | IPR019734 | GO:0005515 | |
| Car08g01187 | 359 | Pfam | CS domain | 160 | 235 | IPR007052 | - | |
| Car08g01187 | 359 | ProSiteProfiles | CS domain profile. | 156 | 245 | IPR007052 | - | |
| Car08g01187 | 359 | PANTHER | PHOSPHATASE-RELATED | 1 | 359 | - | - | |
| Car08g01187 | 359 | SUPERFAMILY | HSP20-like chaperones | 150 | 253 | IPR008978 | - | |
| Car08g01187 | 359 | ProSiteProfiles | SGS domain profile. | 268 | 359 | IPR007699 | - | |
| Car08g01187 | 359 | PANTHER | PROTEIN SGT1 HOMOLOG | 1 | 359 | IPR044563 | GO:0051087 | |
| Car08g01187 | 359 | Gene3D | Tetratricopeptide repeat domain | 2 | 133 | IPR011990 | GO:0005515 | |
| Car08g01187 | 359 | Gene3D | - | 157 | 247 | IPR008978 | - | |
| Car08g01187 | 359 | SUPERFAMILY | TPR-like | 11 | 113 | IPR011990 | GO:0005515 | |
| Car08g01187 | 359 | SMART | tpr_5 | 70 | 103 | IPR019734 | GO:0005515 | |
| Car08g01187 | 359 | SMART | tpr_5 | 2 | 35 | IPR019734 | GO:0005515 | |
| Car08g01187 | 359 | SMART | tpr_5 | 36 | 69 | IPR019734 | GO:0005515 | |
| Car08g01187 | 359 | Coils | Coil | 42 | 62 | - | - | |
| Car08g01187 | 359 | CDD | p23_CS_SGT1_like | 162 | 245 | - | - | |
| Car08g01187 | 359 | Pfam | SGS domain | 278 | 357 | IPR007699 | - | |
| Car08g01187 | 359 | Pfam | Tetratricopeptide repeat | 37 | 68 | IPR019734 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car08g01187 | Car-Chr8 | 13408007 | 13411852 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car08g01187 | 12 | 100 | U-box Gene Family | AT3G07370 | 28.090 | 2.37e-06 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car08g01187 | K12795 | - | gmx:100780174 | 565.844 |