Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01175 ATGCAGGGATGTTTATCAGATGGAACTTTGATAGCAGTGAAGCCTGAAGAGCACCAAATAAAATTGGATTGGTCAACAAGATACAAGATTTGTTTTGGTATTGCTAGAGGTTTAGCATATCTCCATGAAGAATCAAGGTTGAAGGTTGTTCATAGGGACATTAAAGCCACTAATGTGTTGCTTGATAAAGATCTTAATCCAAATATATATGATTTTGGTTTGGCCAAACTTGATGAAGAGGAGAACACTAGCACTCGAATAGCTGGAACATAA 273 0.3663 MQGCLSDGTLIAVKPEEHQIKLDWSTRYKICFGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPNIYDFGLAKLDEEENTSTRIAGT 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01175 90 Gene3D Transferase(Phosphotransferase) domain 1 5 90 - -
Car08g01175 90 Pfam Protein kinase domain 22 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01175 90 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 89 - -
Car08g01175 90 SUPERFAMILY Protein kinase-like (PK-like) 8 90 IPR011009 -
Car08g01175 90 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01175 90 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Car08g01175 90 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 18 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01175 Car-Chr8 13117221 13117905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01175 15 90 Receptor kinase-like Gene Family AT1G53420 79.487 3.82e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car08g01175 Pkinase 5.8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01175 - - egr:104451575 143.665