Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01169 ATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTGCTATTGTTAGATGTTACTGATTTTTCTGTGAAGTTGCAAAGTAGATTTGGATGTCCAAGAAAAGAACCATCTTTCAGAAGGTCAATATCTGAGATGACTTTCGAGCGAATGTCTGGTTTGTTCGGTTCATTTTCGATGCTTCCTTCAACCGGAGAAACTAGAGGCACTACTAGAGGAAGTAGTTCTTTTGACAGTTCTAATAATCCACCACAGCTTCGGAGGAATGCCTCTGCTGCATCTGATCTAAGTAGTGCTTCTTCTCAAAGTGTTTCGACAAATTCAGCTCCTTTAAGACGCACAAGCAGCTTGTGTTTTGATGAAAAGCTCTTTGTGCAGTCACTTTACAAGGTTTTGGTTTCTATCTCAGGAACTGATTCCATTATCTTATACATAAGGGATGTTGAGAAGCTTGTTCGCAAATCACCAAGGTTATATAATTTACTACAAAAAATGATAAAAAGATTGTCAGGCTCGGTGTTAATACTTGGTTCTCAGATATTAGAATTAGACGAAGGTTGCAAAGAAATCGAAAGGATCACTATGTTATTCCCTTACAACATTGTGATCAAACCACCTGAAGATGAAATTCATCTTTGTAGCTGGAAAGGACAATTAGAAGAAGACATGAAAGTCATTAAGTTTCAAGATACTCGAAACCACATTGCTGAAGTACTCTCAGAGAATGACATTGATTGCGACGACTTGAATTCGATATGCTATGCAGACACTATGATCCTAAGTAATTGTATTGAAGAAATTGTTGTATCTGCAATATCTTATCATTTGATGAATACTAAGGAACCTGAATACCGAAACGGAAAGTTAGTTATCTCGGCTAATAGTTTGTCTCATGGATTGAGTTTGTTCCAAGAAGGAAAGAGTAGTGGAAATCTAAACACTAACGATTCTAATAAGGAAAATGGTGGAGACGATACGGCTGGCGCAAAGAATGATGTTCGGAGTGACAACCAAGCACCGGAAAACAAAAGTGAGGCAGAGATATCCATCCCTGTAACGAAAAAAGAAGGCGAAACTCCTATGCTTGCAAAAGTAGACGAAACTCCTATGCCTGCAATAGAAGAATTTCCCGACAACGAGTTTGAGAAGCGAATTAGACCCGAGGTTATACCTGCAAACGAGATAGGCGTTACATTTGCGGATATTGGTGCATTGGATGAGATAAAAGAGTCACTTCAAGAGCTAGTTATGCTTCCCCTTAGAAGACCAGATCTTTTCAAAGGTGGACTTCTAAAACCATGTAGAGGTATATTGCTTTTCGGGCCGCCTGGTACTGGAAAAACAATGCTAGCAAAGGCGATTGCGAATGAAGCAGGAACAAGTTTCATTAACGTCTCCATGTCCACCATCACTTCAAAATGGTTCGGAGAAGATGAAAAGAATGTCCGAGCTTTATTCACACTAGCAGCTAAAGTTGCTCCGACTATTATATTTGTTGACGAAGTTGACAGCATGCTCGGTCAGCGTACTCAATTTGGAGAACATGAGGCCATGAGGAAGATTAAAAATGAATTCATGACACATTGGGATGGACTATTATCAGGACCTAATGAACAAATTCTCGTTCTTGCGGCTACCAATCGACCATTTGATCTCGACGAAGCAATTATAAGACGCTTCGAGCGCAGGATCATGGTTGGTCTACCATCTGGTGACAACAGGGAAATGATCCTTAAAACTCTTCTGGCTAAGGAAAAACATGAAAACTTAGACTTCAAGGAACTAGCAACCATGACAGAAGGATTTAGTGGAAGTGATCTGAAGAATTTGTGCATCACTGCAGCTTATCGACCGGTGAGGGAGTTAATACAGCAGGAGAGAATGAAGGAAATGGAAAAGAAGAAAAGAGAGGCAGAAGGTGTAAGCTCGGAAGATGCGTCGAATAATAAAGATAACGAAGAGCGAGAAATCACGCTGAGGCCTTTAAGTATGGAAGACATAAAACAAGCTAAGAATCAGGTGGCTGCAAGTTTTGCGTCCGAAGGATCAGTAATGGCTGAGCTAAAGCAATGGAACGATTTATATGGCGAAGGCGGTTGGAGGAAGAAACAACAACTTACTTATTTCCTTTAG 2133 0.4013 MLAKALAHYFESKLLLLDVTDFSVKLQSRFGCPRKEPSFRRSISEMTFERMSGLFGSFSMLPSTGETRGTTRGSSSFDSSNNPPQLRRNASAASDLSSASSQSVSTNSAPLRRTSSLCFDEKLFVQSLYKVLVSISGTDSIILYIRDVEKLVRKSPRLYNLLQKMIKRLSGSVLILGSQILELDEGCKEIERITMLFPYNIVIKPPEDEIHLCSWKGQLEEDMKVIKFQDTRNHIAEVLSENDIDCDDLNSICYADTMILSNCIEEIVVSAISYHLMNTKEPEYRNGKLVISANSLSHGLSLFQEGKSSGNLNTNDSNKENGGDDTAGAKNDVRSDNQAPENKSEAEISIPVTKKEGETPMLAKVDETPMPAIEEFPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGTSFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTQFGEHEAMRKIKNEFMTHWDGLLSGPNEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSGDNREMILKTLLAKEKHENLDFKELATMTEGFSGSDLKNLCITAAYRPVRELIQQERMKEMEKKKREAEGVSSEDASNNKDNEEREITLRPLSMEDIKQAKNQVAASFASEGSVMAELKQWNDLYGEGGWRKKQQLTYFL 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01169 710 MobiDBLite consensus disorder prediction 628 662 - -
Car08g01169 710 ProSitePatterns AAA-protein family signature. 540 559 IPR003960 GO:0005524|GO:0016887
Car08g01169 710 MobiDBLite consensus disorder prediction 307 322 - -
Car08g01169 710 CDD AAA 435 568 - -
Car08g01169 710 MobiDBLite consensus disorder prediction 64 107 - -
Car08g01169 710 Gene3D - 569 647 - -
Car08g01169 710 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 710 - -
Car08g01169 710 SMART AAA_5 433 570 IPR003593 -
Car08g01169 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 635 IPR027417 -
Car08g01169 710 Pfam ATPase family associated with various cellular activities (AAA) 437 567 IPR003959 GO:0005524|GO:0016887
Car08g01169 710 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 710 - -
Car08g01169 710 MobiDBLite consensus disorder prediction 628 663 - -
Car08g01169 710 Gene3D - 396 568 IPR027417 -
Car08g01169 710 MobiDBLite consensus disorder prediction 323 341 - -
Car08g01169 710 MobiDBLite consensus disorder prediction 307 352 - -
Car08g01169 710 Pfam AAA+ lid domain 589 633 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01169 Car-Chr8 12823808 12830915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01169 397 628 Calmodulin-binding Proteins AT3G56690 38.559 1.79e-41 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01169 - - gmx:100817952 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01152 04 11759854 11765598 Car08g01169 08 12823808 12830915 PCT