Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01166 ATGAAAAGTATAATAAGCACTTCTGAATTTATGGAGAGGAAAAATCAATCTCAACCTACACAACAAGGTAATGAAAAGAAAAAACATTACAGAGGTGTACGGCAAAGACCATGGGGGAAATGGGCAGCTGAAATAAGAGACCCTAAAAAGGCAGCACGAGTGTGGCTTGGCACCTTTGATACAGCAGAAGCAGCAGCGTCTGCTTATGATGCTGCTGCTTACAAATTCAAAGGAAACAAAGCCAAACTCAATTTCCCTCAACTCATCATTAATAATGTTGATGCTAATTCGGATCTATCACCGTGTAAAAATATTAATGTttcatcttcttcatcatcttcttcttcGCAATATGTTCCATCGAAGAATCTACTTTTTCCGTCGTCTTTGGAGGAAGGGTTCCCAAACCTAATGCAATATGTGCAAGTGCTTTGTAGTAAGGATGATGAAGATCTTCGACGTGCTACTTCATGTCTTTACaataataataacaataacaacaataataataataataacaacaacaaCGAGCAATTTCGTTATTATTATAATTTGCCGCCATTGTTTTCTACATCATCGAGATTTCCATCCTCTACTTCTAAGGATGTTGTTGTGCCTAGGGTTGGAGATTGTGGTTCTTCTGAAAGACGAAATGGTTTTCATGAAAGGAACCCAAGAGGGTCATAA 687 0.3523 MKSIISTSEFMERKNQSQPTQQGNEKKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAASAYDAAAYKFKGNKAKLNFPQLIINNVDANSDLSPCKNINVSSSSSSSSSQYVPSKNLLFPSSLEEGFPNLMQYVQVLCSKDDEDLRRATSCLYNNNNNNNNNNNNNNNNEQFRYYYNLPPLFSTSSRFPSSTSKDVVVPRVGDCGSSERRNGFHERNPRGS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01166 228 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Car08g01166 228 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Car08g01166 228 MobiDBLite consensus disorder prediction 194 228 - -
Car08g01166 228 MobiDBLite consensus disorder prediction 214 228 - -
Car08g01166 228 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Car08g01166 228 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 5 175 - -
Car08g01166 228 MobiDBLite consensus disorder prediction 1 23 - -
Car08g01166 228 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Car08g01166 228 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Car08g01166 228 PANTHER DNA-BINDING DOMAIN 5 175 IPR044808 GO:0003700|GO:0009873
Car08g01166 228 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Car08g01166 228 Gene3D AP2/ERF domain 28 88 IPR036955 GO:0003700|GO:0006355
Car08g01166 228 MobiDBLite consensus disorder prediction 1 34 - -
Car08g01166 228 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01166 Car-Chr8 12732202 12734519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01166 11 160 AP2-EREBP Transcription Factor Family AT5G13330 46.000 5.88e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car08g01166 AP2 4.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01166 - - mtr:MTR_6g033255 237.269