LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car08g01154	ATGGAGAAGAACCTTGATGAAAATTCAAACAGTTTCCCTCGCAAAGACGAGGATCACAACAATGCCGACAACACCCCTCATTCGCCGTTGCTAGAAAATGAAGACAAAGTTGATGCTAAACCGGATGGCGAAACTGAAAAGGTTGATGATGATCTTGTTCAGGGAGAGCCAGAAGCGAaggaggaggagaagaaggaggaggatgcagaagtagcagTTGAGGTTCCGCAGGAAGCGGAACCTGAAACTGAAATAGAGATTCCTCCTCCTAACTTGGAGAAGGTTTCAGAAGATATTGATCAATTCCTTGAAGAGAACAATCATAATAATGAAGAGAAAATTCCTGAATTCGTTAACAAGTTTTTGGATTTGGTAGAACAGAAAATCGCAGAGTATGATGGCAGTGAAACAAAGTGGGGTGAATCCATGGAGAAAGATTCATCGTTTTTGGAAGGTGTGAATCGTGTAACAAAGCTGATGAAATTTTTGACTATAATAATTGAAAGAGGAAATGAAGATAATGAAAATGAAGACGAAAAAGAAGAGAAGAAAGAAAACAAGAATTCAAATTCAATGTTGTTGAACCGAATCGGCGTGATTCAACAACGGGCTATGTCGTACTTGGAAGAGGAGTTTCGTTTGTTAATGGAAGAATCTAGAAACCAAAACAAATCAGAAAACAACCATGACCCGAAAGGGAAACACGTGGCAGCAGCAGAGCCATCAGATGCTGAACCAATAGAGACGGTTATGGATTTCCCGGGTTTTACGGAAGAGGCCGTTACAAATTTAAACAAAATAGCGCGGGAGATGTTGTTAGGTGGTTACGAATCAGAGTGCTGCCACGTGTACGCCGTTTCAAGAAAGTACGCTTTCGGAGACGGTTTGCACAAGCTTGGGTACGAAAGGATAAGCATGGACGAGGTTCAAAAAATGCAATGGGAGTCTTTGGAGAGAGAGATTCCAACATGGATCAACACGTTCAAAGAATGTGCCAACGTGTGGTTCCCTGGCGAACGGAAACTCGTTGGGTTAATTTTCGCCGAGCATCCATCGGTGGCCGACACGCTCTACACCAATCTCACGCGCGTCGTTACTTTTCAGCTTCTCAACTTTGCCGAGAGCGTCGCGATGACTAAACGCGCCGCCGAGAAGCTCTTCAAGCTTCTCGATATGTACGAGACTTTGAGAGACACTGTTCCTAATCTCGAGAATCTCTTCCCGGAGGAGATTGTCGATGAAGTCAAAGCCGAAATGACGTCGGCGAAGAATAGGCTCGGCGAGGTTGCAGTTTTGATATTTTGCGAACTCGAAAACTCGATCAAATCGGACAACGGTAAAACACCGGTGTCCGGTGGTGCCGTTCACCCTCTAACTCGTTACATAATGAACTACCTGAGACTCGCATGTGAGTATAAAGACATATTGGAAGAAGTTTTCAAAGATCATTCGAAAATTGAACGAGCAGATTCAACCAGTAGGCCTCGCTACCCTGGAGAGAATCAAAACGAAAATCAAAGATCATCGAATGATAAGGAAAACACATCACCATTTGCAGCACAGTTGACACGTGTGATGGAGTTGCTTGACACGAATCTTGAAGGAAAAGCAAAGTTATACAAAGAAGTAGCACTAAGTTGCATCTTCATGATGAACAATGGAAGATACATTGTTCAAAAAATAAAAGGTTCATCTGAAATATATGAAGTGATGGGAGAAACGTGGTGTCGTAAAAGATCAACAGAGCTGAGAACTTACCACAAAAACTATCAAATAGAAACATGGGGCAAGATATTGAGTTGTTTAAGTCCTAAAGGTTTGAATGATAATGGGAAGGTGCCGAAGCCAGCACTGAAGGAGAGGTTCAAGACCTTCAATGCATTGTTTGAAGAGATACACAAGACACAGAGTACATGGGTTGTGAGTGATGAACAACTTCAATCTGAGCTTAGAGTTTCAATATCAGCACTTGTCATTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAGGTTTTCACAATATTTGGATCCAGGTAGACAAACAGAGAAGTATATTAAGTTTCAAGCTGAGGATATAGAGAATTACATTGATGAGTTGTTTGATGGAAACCCTCACCATCAAGCAATGGCCAGGAAGAAAGCATGA	2301	0.382	MEKNLDENSNSFPRKDEDHNNADNTPHSPLLENEDKVDAKPDGETEKVDDDLVQGEPEAKEEEKKEEDAEVAVEVPQEAEPETEIEIPPPNLEKVSEDIDQFLEENNHNNEEKIPEFVNKFLDLVEQKIAEYDGSETKWGESMEKDSSFLEGVNRVTKLMKFLTIIIERGNEDNENEDEKEEKKENKNSNSMLLNRIGVIQQRAMSYLEEEFRLLMEESRNQNKSENNHDPKGKHVAAAEPSDAEPIETVMDFPGFTEEAVTNLNKIAREMLLGGYESECCHVYAVSRKYAFGDGLHKLGYERISMDEVQKMQWESLEREIPTWINTFKECANVWFPGERKLVGLIFAEHPSVADTLYTNLTRVVTFQLLNFAESVAMTKRAAEKLFKLLDMYETLRDTVPNLENLFPEEIVDEVKAEMTSAKNRLGEVAVLIFCELENSIKSDNGKTPVSGGAVHPLTRYIMNYLRLACEYKDILEEVFKDHSKIERADSTSRPRYPGENQNENQRSSNDKENTSPFAAQLTRVMELLDTNLEGKAKLYKEVALSCIFMMNNGRYIVQKIKGSSEIYEVMGETWCRKRSTELRTYHKNYQIETWGKILSCLSPKGLNDNGKVPKPALKERFKTFNALFEEIHKTQSTWVVSDEQLQSELRVSISALVIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRFSQYLDPGRQTEKYIKFQAEDIENYIDELFDGNPHHQAMARKKA	766

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car08g01154	766	MobiDBLite	consensus disorder prediction	1	72	-	-
	Car08g01154	766	MobiDBLite	consensus disorder prediction	219	241	-	-
	Car08g01154	766	Pfam	Exo70 exocyst complex subunit	324	660	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Car08g01154	766	MobiDBLite	consensus disorder prediction	487	516	-	-
	Car08g01154	766	Coils	Coil	92	112	-	-
	Car08g01154	766	PANTHER	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN	64	661	-	-
	Car08g01154	766	Coils	Coil	167	187	-	-
	Car08g01154	766	Gene3D	Exocyst complex component Exo70	138	661	-	-
	Car08g01154	766	Gene3D	Exocyst complex component Exo70	720	761	-	-
	Car08g01154	766	MobiDBLite	consensus disorder prediction	1	100	-	-
	Car08g01154	766	PANTHER	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN	722	757	-	-
	Car08g01154	766	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	64	661	IPR004140	GO:0000145\|GO:0006887
	Car08g01154	766	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	722	757	IPR004140	GO:0000145\|GO:0006887
	Car08g01154	766	SUPERFAMILY	Cullin repeat-like	145	660	IPR016159	-
	Car08g01154	766	MobiDBLite	consensus disorder prediction	495	516	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car08g01154	Car-Chr8	12398218	12400518	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car08g01154	721	766	EXO70 exocyst subunit family	AT5G13990	60.417	5.02e-11	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car08g01154	K07195		-	gmx:100819960	779.63