Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01138 ATGTCGTTTCGCAGTATCGTTCGTGATGTAAGGGACGGATTTGGAAGCTTATCAAGGAGGGGTTTTGAGGTAAGGCTTCCTGGCCATGACAGGGGAAAGTCGAGTAATTCGATCCACGAGTCGAACGAGCAACCACGTGCAGTACAGAATAGCCGGTGGGCTAGCCTTCCACCAGAGCTTCTCCGCGATGTTATTAAAAGATTGGAAGAAAGTGAGAGTACATGGCCGGCTCGTAAGCACGTGGTTGCTTGTGCTGGTGTGTGCAAATCTTGGAGAGATATGTGCAAAGAAATTGTTACCAATCTTGACTCCACTGGGATGATTACTTTCCCCGTTTCGTTGAAGCAGCCTGGTTATAGGGATGGACCTATCCAGTGTTTCATAAAGAGAGACAAATCTAAGTTAACTTACCGCCTATTCCTTTGTCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGTACAAGAAGAACAACTTGCACAGAGTACATTATATCAATGAATGCAGATAACATATCAAGGTCTAGCAGCACTTACATAggaaaactaagGTCAAATTTTCTCGGCACCAAATTTATAATTTACGATACACAACCTCCCTACAACAACGCTCAGCTGTCTCCACCGGGCCGGAGCCGTAGGTTTAACTCAAAAAAAGTTTCTCCCAAAGTTCCTAGCGGTAGCTACAATATTGCCCAAATCACCTATGAGTTGAATGTCATTGGTACTCGAGGCCCGCGTAAGATGAACTGCACAATGTCCTCAATCCCTACGTCAGCCCTCGAGCACGGTGGCACTGTCCCTGGCCAGCCAGAGCTCCTTCCCCGCAACCTTGAGGATTCCTTCCGCAGCATATCGTTCTCAAGATCAATTGACAACTCGTCCGAGTTTGGCAGCTCTAGATTCTCAGACATACTCGCGACCAGCAATGATGATGAACCAAAGGACAGACCCATAATTCTCAAGAACAAATCACCTAGATGGCATGAGCAACTGCAATGTTGGTGTCTAAACTTCAGGGGAAGGGTGACAGTTGCATCGGTCAAGAATTTTCAGCTGATTGCTTCGACGCAGCCACCATCAGCTGCTCCTGCACCATCTACACATTCTGATAATGATAAAATTATTCTTCAGTTCGGCAAAGTTGGCAAGGATATGTTCACTATGGACTATAGATATCCTTTATCTGCATTTCAAGCTTTTGCTATTTGCTTGACTAGCTTTGACACAAAACTTGCATGTGAATAA 1266 0.4471 MSFRSIVRDVRDGFGSLSRRGFEVRLPGHDRGKSSNSIHESNEQPRAVQNSRWASLPPELLRDVIKRLEESESTWPARKHVVACAGVCKSWRDMCKEIVTNLDSTGMITFPVSLKQPGYRDGPIQCFIKRDKSKLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMNADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVIGTRGPRKMNCTMSSIPTSALEHGGTVPGQPELLPRNLEDSFRSISFSRSIDNSSEFGSSRFSDILATSNDDEPKDRPIILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPSAAPAPSTHSDNDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01138 421 PANTHER TUBBY-RELATED 1 421 - -
Car08g01138 421 SUPERFAMILY F-box domain 41 96 IPR036047 GO:0005515
Car08g01138 421 MobiDBLite consensus disorder prediction 25 50 - -
Car08g01138 421 Pfam Tub family 114 416 IPR000007 -
Car08g01138 421 ProSitePatterns Tub family signature 2. 406 421 IPR018066 -
Car08g01138 421 Gene3D - 47 103 - -
Car08g01138 421 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Car08g01138 421 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Car08g01138 421 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Car08g01138 421 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Car08g01138 421 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Car08g01138 421 PRINTS Tubby superfamily signature 378 397 IPR000007 -
Car08g01138 421 PRINTS Tubby superfamily signature 399 421 IPR000007 -
Car08g01138 421 Pfam F-box domain 53 99 IPR001810 GO:0005515
Car08g01138 421 Gene3D Tubby Protein; Chain A 109 421 IPR025659 -
Car08g01138 421 SUPERFAMILY Tubby C-terminal domain-like 104 421 IPR025659 -
Car08g01138 421 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Car08g01138 421 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01138 Car-Chr8 12016978 12022166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01138 1 421 TUB Transcription Factor Family AT1G76900 66.449 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Car08g01138 Tub 6.9e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01138 K19600 - pop:7469221 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01138 08 12016978 12022166 Car04g01121 04 11328532 11332056 PCT