Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01122 atggcgagcgagaagattaagattaagaagatagacaacgcaacagcgagacaagttactttttcgaaacgaagaagaggcttgttcaaaaaaggtgaagaactctccgttttgtgtgatgctgatgttgctctcatcattttctcTTCCACCGGAAAGCTCTTTGAGTATTCTAATTTAAGCATGAGGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTGGCAGAGCTGGAAGAACCATCTCTAGAGTTGCAGCTAGTTGAAAACATCAACTGCTCCACATTGAGCAAGGAAATTGCTGAGAAGAGTCATCAGCTAAGGCAGATGAGGGGAGAAGATCTTCATGGTCTGAATGTTGAAGAATTACATCAATTGGAGAGGTCTCTTGAAATTGGGTTGGGGCGTGTACTAGAAACAAAGGAAGAGAAGATTATGATGGAGATCAAACACCTCCAAAGAAAGGGAATGCAGCTGATGGAAGAGAATGACCGACTAATGCGACTTGAGGCGAACATGAACAATGGTAAAATGTTTGGAGGAGTTGAATCAGAGAACGTGGTTAATGAAGAAGGTCAATCCTCAGAATCTGTCACCAACGTTTGTAACTCCACTGGTCCTCCCCAGGACTATGTGAGCTCAGACACATCCCTCAAGTTAGGGCTTCCGTATGCCGGTTAG 684 0.3465 MASEKIKIKKIDNATARQVTFSKRRRGLFKKGEELSVLCDADVALIIFSSTGKLFEYSNLSMREILERHHLHSKNLAELEEPSLELQLVENINCSTLSKEIAEKSHQLRQMRGEDLHGLNVEELHQLERSLEIGLGRVLETKEEKIMMEIKHLQRKGMQLMEENDRLMRLEANMNNGKMFGGVESENVVNEEGQSSESVTNVCNSTGPPQDYVSSDTSLKLGLPYAG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01122 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g01122 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Car08g01122 227 Pfam K-box region 94 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g01122 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Car08g01122 227 MobiDBLite consensus disorder prediction 188 227 - -
Car08g01122 227 MobiDBLite consensus disorder prediction 188 217 - -
Car08g01122 227 SUPERFAMILY SRF-like 4 77 IPR036879 GO:0003677|GO:0046983
Car08g01122 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car08g01122 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car08g01122 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car08g01122 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car08g01122 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car08g01122 227 Coils Coil 150 173 - -
Car08g01122 227 CDD MADS_MEF2_like 5 77 IPR033896 GO:0000977|GO:0045944
Car08g01122 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car08g01122 227 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01122 Car-Chr8 11597908 11602323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01122 1 227 MADS-box Gene Family AT2G22540 67.500 4.86e-109 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car08g01122 K-box 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01122 - - gmx:100789126 336.65