Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01118 ATGGCAGATCTTGTTAGTTACGGGAATGCTGACCGTGACATTCACCAAACATTGATTGCTTTGAAAAAGGGGGCTCAACTGCTTAAATATGGTCGTAAGGGAAAGCCAAAATTTTGTCCGTTTAGACTCTCCCATGATGCATCATCTTTAATCTGGATTTCAAGTGGTGGCGAAAAAAATCTGAAGCTATCTTCTGTCTCACGAATCATTCCTGGACAAAGAACTGCTGTTTTCCAACGGTACCTGCGTCCTGAGAAGGATTACGTGTCTTTCTCACTTATTTATAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGATGTGTGGATTTCTGGTCTCAAAAGACTGATATCGTCTGGTCAAGGTGGTCGGTCAAAAATTGATGGATGGAGTGATGGGGGCCTTAATATTGATGATAGCAAAGACTTAACATCCAATAGTCCTAGTGAAAGTTCAGCGAGTGCGTCACTAGACATCAGTTCTCCTGACATTTCTGCGAGTCTTCCAAATACGTCACCAAAGTTCTTTCCGCCTGACACCACCTTAAATTCCGAAAGGTCACATGCACCATCAGACTCAACAAATATGCAAGTAAAAGGATCTAGTTCAGATACTGTTCGTGTTAGTGTTTCAAGTGCCCCCAGCACATCTAGTCATGGATCTGCACCCGATGACTATGATGCTCTGGGGGATGTATACATATGGGGGGAGATTATCTGTGAAACTGTGAAAGTCGGTGCTGATAAAAGTGTCCATTGTTTCAGCCCGAGGGCAGATGTGCTTCTCCCGAGACCACTGGAGTCCAATATAGTTTTAGATGTACAACATATAGCATGTGGTGTTAGACATGCTTCGTTAGTCACTCGGCAAGGTGAAGTTTTTACGTGGGGTGAAGAATCGGGAGGACGCCTTGGTCATGGTGTTGGGAAGAATGTGGTTCAACCTTGTCTAGTTGAAGCGTTGACTTCTACAACTGTTGATTTTGTTGCGTGCGGGGAGTTCCATTCCTGCGCTGTTACAATGACCGGGGAACTATATACATGGGGTGATGGTACTCATAATGCGGGGCTGCTTGGTCATGGATCTAATTTTAGTCAATGGATGCCAAAGAGAATTGAGGGTCCATTAGAGGGACTTCAAGTTTCATCTGTTGCTTGTGGTCCATGGCACACGGCCTTGATTACTTCAACGGGGAGGCTCTTCACATTTGGCGATGGAACGTTCGGTGTCTTGGGACATGGAGATCGGAAAAATGTTTCATATCCTAGAGAAGTGGAATCGTTATCAGGGTTGAGGACAATAGCCGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGCAACGCAATCTATTGCTAGTTTATCGTCAGGTAAATTATTTACTTGGGGCGACGGAGACAAAAACCGTCTCGGGCATGGGGACAAAGAGGGACGGCTTAAACCAACTTGTGTGCCCGCAATTATTGATTATAATTTTCAAAAAATTGCTTGTGGCCACAGTTTGACAGTAGGGCTGACAACATCTGGACGTGTTTTTACCATGGGAAGTACCGTTTACGGTCAGCTTGGAAATACTCAGTCTGATGGAAAGCTGCCGTGCTTAGTTGGAGATAAGATTGCATCAGAGTCCATTGAAGAAATTGCTTGCGGTGCATATCATGTGGCTGTTTTAACATCCAAAAATGAAGTTTATACTTGGGGTAAGGGTTCAAATGGGAGATTAGGTCATGGAGATCTCGAAGATAGAAAAACACCAACTTTGGTTGAAGCATTGAAAGATAGACATGTGAAATTTATTGCATGTGGTTCAAACTACTCTGCCGCCGTATGCCTTCATAAGTGGGTATCCAGTGCTGAGCAGTCACAGTGCTCTGCTTGTAGACAAGCATTCGGCTTCACTCGAAAGAGGCACAATTGTTATAATTGCGGACTTGTGCATTGCCATTCATGTAGTTCAAGGAAAGTATTAAGAGCAGCACTGGCTCCTAATCCTGACAAGCCATATCGTGTGTGTGATTCTTGTTTCACCAAATTGAGCAAGGTTGCAGAAGCTAACAGTAATAATCAGAGGAATGCTTTGCCGCGTCTTTCAGGTGAAAACAAGGACAGGTTATTAGAAAAATCCGATTTAAGATTATCTAAAGTTGTTATTCCTTCAAATATGGATTTGATAAAGCAGCTAGATAACAAGGCAGCCAAACAAGGAAAGAAAGGTGATACGTTCTCGCTAGTTCGCAACTCTCAAACACCTTTGCTACAGCTGAAAGATGTTGTCTTCTCCACTGCTGTTGATCTGAGACGAACAGCTCCAACTCCAAGACCATTGATTGGATCATCAGGAGTAAGTTCTAGGTCCGTGTCCCCTTTCTCTAGAAGATCATGCCCTCCTCGCTCAGCTACACCTATTACAACAATGGCGGGGCTTTCCTTCTCCAAAAATGTTGCTGATGGTTTGAAAAAAACAAATGAACTTTTAAATCAAGAAGCAAATAAGTTACTTTCTCAGGTCGAGAGCCTGAAAAAGAGATGTGAGCTGCAAGAATTAGAGCTTCAAAGGTCTGCAAAAAAGATTCAAGAAGCTATTGCAGTAGCTACTGAGGAGTCTACTAAATGCAAAGCTGCAAAAGAAGTTATAAAGTCACTTACGGCACAGCTGAAAGATCTTGCTGAGAGGCTTCCTTCTGAAGTTTATGATGCCGAAAAAATTAGACCAGCTTACCTTCCAAATGGTATCGGCTCCAATGGCGTTCACTATCCAGTTACAAATGGAGAGCGGCACTCAATAGCGGAATCAATTAGTGGCTCTAGTTTAGCCTCCATAGGACTCGAACCCTCTCTCTTTGACAGAACTGCACGTAATTTGCCAGGAGCCTATGGAACAAATCTCCACCAGCAAATCCAAGGCATTATGATCTCTAACGGGACCAGTAATTATCCAGATGTTAAATTGCCAAATGGCAGCAGCGTGATTCAGTCAAGTAGTAGTAGCATGTCAGATATTGTTGATGGTATGGATTCTGGGAATTTCCGTGATGACGCGAGTGGTTTGAAATCGACAACTGCATTGGCCACTAATAGCAATCAAGTTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTGGTGGCCATGCATGATGGAACAAGAGATCTGAAACGAGTGCGTTTCAGCCGGAGGAGATTTGGAGAGAACCAAGCCGAGAATTGGTGGTCAGAGAACCGAGAAAAGGTATACGAAAAATACAATGTTCGTAGCGTGGACAAGTCTTCTACCCAAGCAGCACATAGGGCAGAGGATGCTGGTTCTCCTGTGTCCCAAATTTAG 3366 0.4358 MADLVSYGNADRDIHQTLIALKKGAQLLKYGRKGKPKFCPFRLSHDASSLIWISSGGEKNLKLSSVSRIIPGQRTAVFQRYLRPEKDYVSFSLIYNNGKRSLDLICKDKVEADVWISGLKRLISSGQGGRSKIDGWSDGGLNIDDSKDLTSNSPSESSASASLDISSPDISASLPNTSPKFFPPDTTLNSERSHAPSDSTNMQVKGSSSDTVRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEIICETVKVGADKSVHCFSPRADVLLPRPLESNIVLDVQHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPCLVEALTSTTVDFVACGEFHSCAVTMTGELYTWGDGTHNAGLLGHGSNFSQWMPKRIEGPLEGLQVSSVACGPWHTALITSTGRLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIATQSIASLSSGKLFTWGDGDKNRLGHGDKEGRLKPTCVPAIIDYNFQKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNTQSDGKLPCLVGDKIASESIEEIACGAYHVAVLTSKNEVYTWGKGSNGRLGHGDLEDRKTPTLVEALKDRHVKFIACGSNYSAAVCLHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKVLRAALAPNPDKPYRVCDSCFTKLSKVAEANSNNQRNALPRLSGENKDRLLEKSDLRLSKVVIPSNMDLIKQLDNKAAKQGKKGDTFSLVRNSQTPLLQLKDVVFSTAVDLRRTAPTPRPLIGSSGVSSRSVSPFSRRSCPPRSATPITTMAGLSFSKNVADGLKKTNELLNQEANKLLSQVESLKKRCELQELELQRSAKKIQEAIAVATEESTKCKAAKEVIKSLTAQLKDLAERLPSEVYDAEKIRPAYLPNGIGSNGVHYPVTNGERHSIAESISGSSLASIGLEPSLFDRTARNLPGAYGTNLHQQIQGIMISNGTSNYPDVKLPNGSSVIQSSSSSMSDIVDGMDSGNFRDDASGLKSTTALATNSNQVEAEWIEQYEPGVYITLVAMHDGTRDLKRVRFSRRRFGENQAENWWSENREKVYEKYNVRSVDKSSTQAAHRAEDAGSPVSQI 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01118 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 696 IPR013083 -
Car08g01118 1121 Gene3D - 458 636 IPR009091 -
Car08g01118 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Car08g01118 1121 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Car08g01118 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Car08g01118 1121 Pfam Transcription factor BRX N-terminal domain 876 911 IPR027988 -
Car08g01118 1121 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1102 - -
Car08g01118 1121 Coils Coil 825 866 - -
Car08g01118 1121 CDD PH_PLC_plant-like 12 124 - -
Car08g01118 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 296 IPR000408 -
Car08g01118 1121 MobiDBLite consensus disorder prediction 1098 1121 - -
Car08g01118 1121 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1102 - -
Car08g01118 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 455 IPR000408 -
Car08g01118 1121 SUPERFAMILY RCC1/BLIP-II 235 624 IPR009091 -
Car08g01118 1121 Pfam FYVE zinc finger 623 689 IPR000306 GO:0046872
Car08g01118 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
Car08g01118 1121 ProSiteProfiles BRX domain profile. 1041 1096 IPR013591 -
Car08g01118 1121 MobiDBLite consensus disorder prediction 780 811 - -
Car08g01118 1121 MobiDBLite consensus disorder prediction 144 229 - -
Car08g01118 1121 SUPERFAMILY PH domain-like 13 123 - -
Car08g01118 1121 Gene3D - 13 129 IPR011993 -
Car08g01118 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 349 400 IPR000408 -
Car08g01118 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 466 513 IPR000408 -
Car08g01118 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Car08g01118 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 404 452 IPR000408 -
Car08g01118 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 572 619 IPR000408 -
Car08g01118 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 518 567 IPR000408 -
Car08g01118 1121 Pfam Transcription factor regulating root and shoot growth via Pin3 1040 1095 IPR013591 -
Car08g01118 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 519 570 IPR000408 -
Car08g01118 1121 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 627 689 IPR017455 -
Car08g01118 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Car08g01118 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 403 IPR000408 -
Car08g01118 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Car08g01118 1121 SMART fyve_4 619 690 IPR000306 GO:0046872
Car08g01118 1121 MobiDBLite consensus disorder prediction 144 228 - -
Car08g01118 1121 PRINTS Chromosome condensation regulator RCC1 signature 405 421 IPR000408 -
Car08g01118 1121 PRINTS Chromosome condensation regulator RCC1 signature 439 452 IPR000408 -
Car08g01118 1121 PRINTS Chromosome condensation regulator RCC1 signature 557 573 IPR000408 -
Car08g01118 1121 PRINTS Chromosome condensation regulator RCC1 signature 573 587 IPR000408 -
Car08g01118 1121 MobiDBLite consensus disorder prediction 785 811 - -
Car08g01118 1121 SUPERFAMILY FYVE/PHD zinc finger 623 695 IPR011011 -
Car08g01118 1121 Coils Coil 881 901 - -
Car08g01118 1121 Gene3D - 360 457 IPR009091 -
Car08g01118 1121 Gene3D - 185 359 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01118 Car-Chr8 11480221 11489633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01118 885 1113 Major Intrinsic Protein MIP AT1G31880 30.131 1.35e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01118 - - gmx:100805364 1795.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01118 08 11480221 11489633 Car04g01136 04 11610890 11621403 PCT