Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01115 ATGGAGAATCCTTTATGTTATGATTTCATGCTTTTGAAAGATCCTTCCTCATGTATTAACCATTTGTTGGTTATTTTCTTTGATTTGTTCATGCTGATGATGCTGTCATTCATCATGTTCCTGAAGTTTTCCTCAAGACCCTTTTGGAGTCTAGTAAAACATTCAAACTTGCAGCTAGTTTCTGCCATAACCAATGGCTCTCTTGGTTTGTTGCATTTATGCTTTGGAATTTTGGTTTTAGAGGAAAAGTTAAGAAAAACACACAATGTATTTCCTCTTAACTTTTGGTTGCTAGAACTCATTCATGGATTCACATGGTTGTTTGTAAGTTTAACTATAAGTCTTCAGATAAAACAACTCCCAAGATCATGGTTGTGGCTTTTTTCTATTCTAATATTCTTTGTTTCATTTATATTATGTTCTTTTTCCATCTCTTATGCAATTGGAAGTAGAGAACTATCTCTCAAGGAAGCTTTAGATGTTCTGTCGATTCTAGGCGCATCGATACTTCTTGTATGCACTTACAAAGAATGTAAATGTGAAGATGAAGTTGAAAGAGACACTAGTGAAAGGCTTTATACTCCCTTAAATAGCCAACTCAATGATGTTGTACCTATTAGCCATGTAACTCCATTTGCTAAAGTTGGATTATTTAGTAAGATATCTTTTTGGTGGTTGAATCCATTGATGAAAAGAGGTCAAGAGAAAACACTTGAAGATGAAGATATCCCAAAGTTAAGAGAGTCTGACCGTGCTGAAAGATGTTATTCGTTATTCGAAGAACAGTTAAACAAAAGAAGAGAAAATGAATCGTCATCCCATTCATCGATTTTATCGACAATAGTCTTGTGCCACAAGAGAGAGATTTTGGTAACTGGATTCTTTGCTTTGATTAAGGTACTCAGTCTATCTTGTGGTCCTCTACTTCTGAATGCCTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATATATTGGCTATATCACTATTCTTTATAAAAATCATAGAATCCCTATCACAAAGACAATGGTATTTCCAAAGTAGACTTATTGGGATGAAAGTTAGATCAGTACTTACTGCAGCCATTTATAAAAAAATACTAAGGCTATCCAATTCTTCTAGATTGATTCACTCAAGTGGTGAGATTACGAATTATATGACTGTAGATTCTTATAGAATTGGAGAATTTCCATTTTGGTTTCACCAAATATGGACAACAATCCTTCAACTTTGTATTGCATTAGTAATTCTGTTTCGCACAATTGGACTAGCGACACTGGCATCGTTGGCAGTGATAGTTATCACTGTGCTTTGCAACGCTCCATTAGCTAACTTGCAACACAAGTTTCAAAGTAAACTTATGGTGGCGCAAGACGAGCGATTAAAGGCTAGTTCAGAGGCTCTGGTGAATATGAAAGTGTTGAAGCTATATGCATGGGAAAGACATTTTAAAAATGCTATAGAAAAGTTAAGAAATGCAGAACTTAAACTGATATATGCAGTGAATTTAAGAAGAGCATACCTTGTTTGTCTCTTTTGGACTGCGCCGATATTGGTGTCAGCCGCTTCTTTTCTAGCATGTTACTTCCTAAAAGTTCCTTTGCATGCAAGTAATGTTTTCACATTTGTGGCAACTTTACGCCTCGTTCAAGAGCCTATTACAAGCATCTCTGATGTTATAACGGTCGTAATTCAAGCAAAAGTTGCATTTGGTCGGATTGGTAATTTTCTCGAGGCACCAGAACTGCAAAGTGTAAATTTGAAGAACATGTGCTTTAATGAGAGCTTCAAAGGCTCAATTTTAATAAAATCTGCTGAATTTTCATGGGAAAGTAATGTATCAAAGCCAACACTAAGAAACATAAATTTAAAAGTTGGAAATGGACAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACTCTCTTAGCAACAATTCTTGGAGAAGTTTTTAAAACAAAAGGAACTATTGATGTTCATGGGAAGTTAGCATATGTTTCTCAAACAGCATGGATACAAACAGGCACAATACAGAAAAACATTTTATTTGGATCTGAATTGGATGATCAAAGATATCAAGAAACACTTCAAAGGTCTTCACTGGTAAAGGATCTTGAGTTGCTTCCTTATGGAGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAGCGAATTCAACTCGCTCGTGCTCTTTATCAGAATGCTGATATATATCTATTGGATGATCCTTTTAGTGCTGTTGATGCACATACTGCAAAGAGTTTATTTAATGATTATATCATGGAAGGACTCAAAGGGAAAACAATCTTACTCGTAACGCATCAAGTTGATTTCCTCCCAGCATTTGATACTATTTTGTTGATGTCTAATGGAGCAATCCTACAAGCTGGTCCATATCACCAGCTATTGACCTCAAGCAAAGAATTCCATGACCTTGTCAATGCTCACAAGGAAACTGCTGGTTCTAACCAGCTTGATAATGTTACTTTTTCTCAGAAATATTCAACTACTAGAAAAATTACACAAGCTTTTGAGGAAAATCATATTAAAGAAGCAAATGGAAATCAATTAATTaagcaagaagaaagagagaaaggagacacaggattgaagCCTTACTTACAATACATGAATCAAATGAAAGGCTACATTTTCTTCACTGTGGCTTCACTTTGTCACCTTGTTTTTGTGATTTGTCAGATATTACAAAACTCATGGATGGCTGCAAATGTTGACAATCCTCTCGTCGACAAGTTGAAATTGCTTTTAGTTTATTTCCTGATCGGAGTTTGTTCCACAGTTTTCTTGCTCACAAGATGTCTACTTGTAGTTGCTTTGGGTCTTCAATCATCAAAATGTTTATTTTCACAGTTGATGAACTCTCTCTTTCGCGCGCCCATGTCGTTTTATGACTCTACGCCATTGGGAAGGATACTTAGTAGGGTCTCTTCTGATCTTAGTATTATGGATGTTGACATTCCATATAGCATTGCATTTGCTGTGGGAGGCACAATAAATTTTTACTCTAGTCTTACAGTTTTGGCAGTTGTTACATGGCAAGTCTTGATTGTGGCTATACCAATGGTGTACGTCGCGATTTGCATGCAGAGATACTACTTTGCCACAGCAAAAGAAGTGATGAGAATGAGTGGCACAACAAAATCCCATTTAGCAAATCATGTAGCTGAAACTGTTGCTGGAACTATGACAATAAGAGCTTTTGAGGAGGAAGATAGATTTTTTGAGAAAAATCTAGATCTAATTGATATTAATGCTAGTGCATCATTCCACAATTTTGCCTCAAATGAGTGGTTGATCCAAAGGTTAGAAACAATAACTGCAGTTGTTCTTTCTTCTGCAGCACTTTGCATGGTTATGCTTCCATCAGGGACTTTCACCTCTGGAGTTATTGGTATGGCTCTATCTTATGGCCTTACATTAAATGCTTCTTTAGTATTGTCAATTCAAAGTCAATGCAATCTTGCAAATCATATAATATCAGTAGAAAGGCTAAATCAATATATGCATATACAAAGTGAGGCACAAGAAATAATAGAAGGAAATCGACCTCCTTTGGATTGGCCACTTGCTGGAGAAGTACAAATAAATGACTTGAAGATAAAATACAGAGCAGATGGAGCAGTTGTACTCAATGGGATCACATGCACATTTAAAGGAGGACACAAGATTGGTATTGTTGGAAGAACAGGAAGTGGTAAATCTACTCTTATAAGTGCTTTATTTCGTCTTGTGGAACCAACTGGAGGAAAAGTTGTAGTTGACGGCATAGATATCTCATCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGGATTATACCTCAGGATCCTACCCTTTTTAATGGGACAGTTAGATATAACTTGGATCCTTTATTTCAATACTCTCATCAAAATATATGGGAGGTTCTTGGGAAGTGTCAATTGCGAGAAGTTGTCAAAGAGAAAGAAAATGGCTTAAACTCCTCAGTTGTTGAAGATGGATCAAATTGGAGCATGGGACAAAGACAATTATTTTGTTTGGGACGTGCTCTTTTAAGGAGAAGCAAAATATTAGTGTTGGATGAAGCAACTGCATCAATTGATAATTCAACTGATTTAATTTTGCAGAAAATAATTAGAACTGAGTTTGCAGATTGTACAGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGTAAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGAATCCTTGTTTAGGAAGCTTGTTAAGGAATATTGGTCTCATACTCATACATAG 4368 0.3587 MENPLCYDFMLLKDPSSCINHLLVIFFDLFMLMMLSFIMFLKFSSRPFWSLVKHSNLQLVSAITNGSLGLLHLCFGILVLEEKLRKTHNVFPLNFWLLELIHGFTWLFVSLTISLQIKQLPRSWLWLFSILIFFVSFILCSFSISYAIGSRELSLKEALDVLSILGASILLVCTYKECKCEDEVERDTSERLYTPLNSQLNDVVPISHVTPFAKVGLFSKISFWWLNPLMKRGQEKTLEDEDIPKLRESDRAERCYSLFEEQLNKRRENESSSHSSILSTIVLCHKREILVTGFFALIKVLSLSCGPLLLNAFILVAEGNESFKYEGYILAISLFFIKIIESLSQRQWYFQSRLIGMKVRSVLTAAIYKKILRLSNSSRLIHSSGEITNYMTVDSYRIGEFPFWFHQIWTTILQLCIALVILFRTIGLATLASLAVIVITVLCNAPLANLQHKFQSKLMVAQDERLKASSEALVNMKVLKLYAWERHFKNAIEKLRNAELKLIYAVNLRRAYLVCLFWTAPILVSAASFLACYFLKVPLHASNVFTFVATLRLVQEPITSISDVITVVIQAKVAFGRIGNFLEAPELQSVNLKNMCFNESFKGSILIKSAEFSWESNVSKPTLRNINLKVGNGQKVAICGEVGSGKSTLLATILGEVFKTKGTIDVHGKLAYVSQTAWIQTGTIQKNILFGSELDDQRYQETLQRSSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTAKSLFNDYIMEGLKGKTILLVTHQVDFLPAFDTILLMSNGAILQAGPYHQLLTSSKEFHDLVNAHKETAGSNQLDNVTFSQKYSTTRKITQAFEENHIKEANGNQLIKQEEREKGDTGLKPYLQYMNQMKGYIFFTVASLCHLVFVICQILQNSWMAANVDNPLVDKLKLLLVYFLIGVCSTVFLLTRCLLVVALGLQSSKCLFSQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDVDIPYSIAFAVGGTINFYSSLTVLAVVTWQVLIVAIPMVYVAICMQRYYFATAKEVMRMSGTTKSHLANHVAETVAGTMTIRAFEEEDRFFEKNLDLIDINASASFHNFASNEWLIQRLETITAVVLSSAALCMVMLPSGTFTSGVIGMALSYGLTLNASLVLSIQSQCNLANHIISVERLNQYMHIQSEAQEIIEGNRPPLDWPLAGEVQINDLKIKYRADGAVVLNGITCTFKGGHKIGIVGRTGSGKSTLISALFRLVEPTGGKVVVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLFQYSHQNIWEVLGKCQLREVVKEKENGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSKILVLDEATASIDNSTDLILQKIIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPMNLMKREESLFRKLVKEYWSHTHT 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01115 1455 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 901 1176 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01115 1455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1213 1447 IPR003439 GO:0005524
Car08g01115 1455 SUPERFAMILY ABC transporter transmembrane region 896 1196 IPR036640 GO:0005524|GO:0016021
Car08g01115 1455 Pfam ABC transporter transmembrane region 291 554 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01115 1455 Pfam ABC transporter transmembrane region 904 1162 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01115 1455 Pfam ABC transporter 1230 1378 IPR003439 GO:0005524
Car08g01115 1455 Pfam ABC transporter 623 757 IPR003439 GO:0005524
Car08g01115 1455 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 53 1454 - -
Car08g01115 1455 CDD ABCC_MRP_domain1 605 804 - -
Car08g01115 1455 SUPERFAMILY ABC transporter transmembrane region 278 583 IPR036640 GO:0005524|GO:0016021
Car08g01115 1455 ProSitePatterns ABC transporters family signature. 730 744 IPR017871 GO:0005524
Car08g01115 1455 Gene3D - 585 854 IPR027417 -
Car08g01115 1455 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 290 570 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01115 1455 Gene3D - 1197 1448 IPR027417 -
Car08g01115 1455 CDD ABCC_MRP_domain2 1211 1431 - -
Car08g01115 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1203 1446 IPR027417 -
Car08g01115 1455 CDD ABC_6TM_ABCC_D1 291 578 IPR044746 GO:0140359
Car08g01115 1455 Gene3D ABC transporter type 1, transmembrane domain 860 1195 IPR036640 GO:0005524|GO:0016021
Car08g01115 1455 Gene3D ABC transporter type 1, transmembrane domain 259 584 IPR036640 GO:0005524|GO:0016021
Car08g01115 1455 SMART AAA_5 632 805 IPR003593 -
Car08g01115 1455 SMART AAA_5 1239 1431 IPR003593 -
Car08g01115 1455 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 53 1454 - -
Car08g01115 1455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 607 828 IPR003439 GO:0005524
Car08g01115 1455 CDD ABC_6TM_ABCC_D2 899 1188 IPR044726 GO:0140359
Car08g01115 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 828 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01115 Car-Chr8 11439497 11453341 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01115 599 836 Calmodulin-binding Proteins AT2G36910 31.128 3.18e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01115 K05666 - gmx:100787314 2167.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01115 08 11439497 11453341 Car04g01141 04 11674116 11681249 PCT