Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01079 ATGGCTGAAGAAAATAAATCTAATAGTTCATCTTCTCATTCAGAAAAAGCTTCTGCTCCGTCTCCATCTTCATCATTTATACCAACATTAGAAGACTCAGATTCTCCGGAAAAAGCGCCATCAAAGCCTCCGCCCTCGCCGCCATTGGcaccgccaccacattctccaccaccaccaccaccaccttcgccttctcatcctccaccacctcctccgtctccatcaccacctccaccacaacagcacgctccacctccgcattctccaccacctccaccaaaagtttcacctccaccacctcatcggtcgtcaccgcctccaacaccattatcatctccgccacctccatcatcgtcaccaccatcaccatcaccaccgccgccCGAAGTTAACTCTCCCCCTCCCCCTCCTTCACCATCACACCCTCAATCCCCTCCTCCATCTCCTCCATCTCCTCAAGCTCCATCCATACCTTCTCCCTCTTCCCACATTAGTCCTCCGCCACCGCAAAACCATCCTCCGCCACCGCAAAACCATCCTCCGCCGCAATCTTCACAGACCACTCCCCCAAGCTCCCATTCAAAACCAAACTCTCCACCACCTAAAAGCCACTCAATATCCAAACCACAATCCTCCAATGGAAACCATACAGGACAATACATTGCTATAGCTTTCGCAGCAATTTTGATTGTCGCCTTTATTGCCATCATCTTTTTTTTCGTGTTAAGAAGGAAAGACAAACGAGGGGGGAATATGCCACCCTCTAGAAAATCTCAAATGAAAGGAGATGTACATTACTATGTAGACTCACCTGGTTATGGTTATAGGAACCATGGAGGTGTAATCCATCATTTGAGAACTCCTTCAGACCCAAATCAACAACCCCTAAGTGCTGGACAAATAGCTTATAGTTATGAAAAAATTGTGGAAATTACTAATGGATTTTCGAGCGAAAACGTAATAGGAGAAGGTGGTTTTGGGCGTGTTTACAAGGCTTCAATGCCAGATGGTAAAGTTGGCGCTGTTAAGTTGTTGAAAGCTGGTAGTGGTCAAGGAGAAAGGGAATTTAGAGCAGAGGTTGATATTATTAGTCGTGTTCATCATCGACATTTGGTATCGTTGCTTGGTTATTGTATATCTGAACAACAAAGAGTTCTTATTTATGAGTTTGTTCCTAATGGGAATCTTGATCAACATTTGCATGAAAGTGAATGGAGTGTTTTGGATTGGCCTAAGAGGATGAAGATAGCAATTGGTGCTGCAAGGGGACTAGCATATCTACATGAAGGATGCAATCCAAGGATTATTCATAGAGATATTAAGTCAGCAAATATACTTTTGGATAATGCATACGAGGCACAGGTTGCAGACTTTGGACTTGCAAGGCTAACCGATGATGCTAATACTCATGTATCAACTAGAGTGATGGGTACTTTTGGATACATGGCTCCAGAGTATGCGACGAGTGGAAAATTAACGGATAGATCCGATGTTTTCTCATTTGGAGTTGTCCTTCTTGAGCTTATAACTGGAAGAAAACCTGTTGATCCAACACAACCTGTTGGAGATGAGAGTTTAGTTGAATGGGCTCGTCCACTTCTGCTTCGTGCAATTGAAACAGGTGACTTTAGTGATCTTGTAGACCCAAGGCTTCAAAAGCAATACGTCGAAAGCGAAATGCTCAAAATGATTGAAGCAGCTGCAGCATGCGTTCGACATTCCGCGCCAAAACGACCTCGTATGGTTCAGATTGCAAGAGCCTTAGACAGTGGAGATCAAATATATGATCTATCAAATGGAATAAAATATGGTCAAAGCACAGTTTATGATTCTGGACAGTACAATGAAGACATAATGAGATTTAGAAGAATGGCTAATGGAAGTTTTGGTGAATCCGATTTTGATATGTGCAGCATAGAATATAGTTCAAAAGTCCCACAAAGTTCAAGTGGTGTTGATTCAGAAATTAGAACTTTCCAAGGCCAAAAAAATACTATTGATAACAAATCTTGA 2013 0.3676 MAEENKSNSSSSHSEKASAPSPSSSFIPTLEDSDSPEKAPSKPPPSPPLAPPPHSPPPPPPPSPSHPPPPPPSPSPPPPQQHAPPPHSPPPPPKVSPPPPHRSSPPPTPLSSPPPPSSSPPSPSPPPPEVNSPPPPPSPSHPQSPPPSPPSPQAPSIPSPSSHISPPPPQNHPPPPQNHPPPQSSQTTPPSSHSKPNSPPPKSHSISKPQSSNGNHTGQYIAIAFAAILIVAFIAIIFFFVLRRKDKRGGNMPPSRKSQMKGDVHYYVDSPGYGYRNHGGVIHHLRTPSDPNQQPLSAGQIAYSYEKIVEITNGFSSENVIGEGGFGRVYKASMPDGKVGAVKLLKAGSGQGEREFRAEVDIISRVHHRHLVSLLGYCISEQQRVLIYEFVPNGNLDQHLHESEWSVLDWPKRMKIAIGAARGLAYLHEGCNPRIIHRDIKSANILLDNAYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPVGDESLVEWARPLLLRAIETGDFSDLVDPRLQKQYVESEMLKMIEAAAACVRHSAPKRPRMVQIARALDSGDQIYDLSNGIKYGQSTVYDSGQYNEDIMRFRRMANGSFGESDFDMCSIEYSSKVPQSSSGVDSEIRTFQGQKNTIDNKS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01079 670 CDD STKc_IRAK 321 589 - -
Car08g01079 670 Gene3D Phosphorylase Kinase; domain 1 279 390 - -
Car08g01079 670 MobiDBLite consensus disorder prediction 1 213 - -
Car08g01079 670 SUPERFAMILY Protein kinase-like (PK-like) 293 588 IPR011009 -
Car08g01079 670 MobiDBLite consensus disorder prediction 644 670 - -
Car08g01079 670 PRINTS Proline rich extensin signature 40 61 - -
Car08g01079 670 PRINTS Proline rich extensin signature 63 79 - -
Car08g01079 670 PRINTS Proline rich extensin signature 81 98 - -
Car08g01079 670 PANTHER RECEPTOR-LIKE KINASE 67 644 - -
Car08g01079 670 MobiDBLite consensus disorder prediction 198 213 - -
Car08g01079 670 Pfam Protein tyrosine and serine/threonine kinase 318 587 IPR001245 GO:0004672|GO:0006468
Car08g01079 670 MobiDBLite consensus disorder prediction 39 197 - -
Car08g01079 670 MobiDBLite consensus disorder prediction 1 31 - -
Car08g01079 670 SMART serkin_6 315 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01079 670 ProSiteProfiles Protein kinase domain profile. 315 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01079 670 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 67 644 - -
Car08g01079 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Car08g01079 670 Gene3D Transferase(Phosphotransferase) domain 1 391 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01079 Car-Chr8 10574487 10579564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01079 194 656 Trihelix Transcription Factor Family AT1G70460 56.998 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Car08g01079 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01079 - - lja:Lj2g3v1414850.1 716.072