Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01071 ATGTCAACACTTAACCATCTTTTTGATCTTCCAGAACAGATATGTTATGTACAATGTGGATTTTGTACCACCATTTTAATGGTAAGTGTTCCATGCAGCAGTTTATCAATGGTGGTTACAGTAAGATGTGGTCACTGCACAAGCCTCTTATCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTTCACCTTTTAGCATCTCTTACTCATCTTGAGCCAAAAGAAAGTAGTCAAGAAGAAGATGCAAACAAGTGTTTGAACAGTAATAGTGCATCCATGATGACATATTCTGATTGTGAGGAAGATGATGTAATTCCAATTAGCAATGTAGTGAATAAACCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAACCGCTTCATCAAAGATGAGATTAAAAGGCTAAAGGCTCAAAACCCTGATATGGCTCACAAGGAAGCTTTTAGCACAGCAGCAAAAAATTGGGCCAATTGCCCCCCAACTCAATGCAAAGGAGATGAAGAGAACTGTAGCCAGACTGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCATGATGTTGAGGTGAATGAAGAAGAACAAGGTTTCCGTGGAAGAAAGGTAGCAAGAAATTCTATCTTGGAAAGGACACCATTTCAGTGA 648 0.3935 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLEPKESSQEEDANKCLNSNSASMMTYSDCEEDDVIPISNVVNKPPEKRQRTPSAYNRFIKDEIKRLKAQNPDMAHKEAFSTAAKNWANCPPTQCKGDEENCSQTDQLVDLDSQVDPHDVEVNEEEQGFRGRKVARNSILERTPFQ 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01071 215 PANTHER AXIAL REGULATOR YABBY 4 1 180 - -
Car08g01071 215 PANTHER PROTEIN YABBY 6-RELATED 1 180 IPR006780 GO:0007275
Car08g01071 215 Gene3D High mobility group box domain 109 173 IPR036910 -
Car08g01071 215 SUPERFAMILY HMG-box 109 162 IPR036910 -
Car08g01071 215 Pfam YABBY protein 11 163 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01071 Car-Chr8 10479796 10482463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01071 2 215 C2C2-YABBY Transcription Factor Family AT1G23420 56.332 9.41e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Car08g01071 YABBY 4.5e-62 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01071 K25796 - gmx:100804172 372.859