Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01061 ATGGAGGAAATGTACGGAGTACCGTCGACGGTGGAATACGCCGACAAATCCCTGATGACGCCGGAGAATCTGATCTTCGCGGCGGACTACCACAGTTTCCTCATGTCTACTTCATCCGCTAACCGGATTCCTATGTTCGGATCCGACGATATCTTCTCGGCGGAACCCTCATCAGCCGCAATTCAAGATGACGTGGCATCTAGCGTTATGAAAGCTAAAATCGCTTCTCACCCTTACTACCCTCGCCTCCTCCAAGCTTACATCGATTGTCAGAAGGTTGGTGCTCCTCCTGAAATCGCGCGTTTGTTAGAGGAAATCAGTAGAGAAAATGATCAGTATAAGAGAGACGTTGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTTGACGAATTTATGGAAACTTACTGCGACATGCTTGTGAAGTATAAATCAGACCTTACTCGTCCTTTTGACGAAGCAACAACGTTCCTCAACAAGATTGAAACGCAACTCAGTCATCTCTGTACTGGTGCTTCAGTTCCCACTCCTTCTGATGATGGTGGTGCATCTTCGGACGAAGATGTTAGTACTGGAGAGGGTGATTTTCAAGATGGACAATCAAGGGGGGAAGATCGTGAGCTCAAGGATAGGCTTTTACGCAAGTTTGGGAGTCACATTGGCACTTTGAAATTGGAGTTTTCAAAGAAAAAAAAGAAGGGTAAGCTTCCCAAGGAAGCAAGACAAACACTACTTCAATGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCCAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTACGATGGAAAATTTTACCGGAAGGTTCCTTGGTGAAGAATGA 933 0.4502 MEEMYGVPSTVEYADKSLMTPENLIFAADYHSFLMSTSSANRIPMFGSDDIFSAEPSSAAIQDDVASSVMKAKIASHPYYPRLLQAYIDCQKVGAPPEIARLLEEISRENDQYKRDVVVSTCFGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLSHLCTGASVPTPSDDGGASSDEDVSTGEGDFQDGQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSTMENFTGRFLGEE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01061 310 ProSiteProfiles ELK domain profile. 207 227 IPR005539 GO:0003677
Car08g01061 310 MobiDBLite consensus disorder prediction 170 185 - -
Car08g01061 310 SMART HOX_1 229 294 IPR001356 GO:0003677
Car08g01061 310 SUPERFAMILY Homeodomain-like 228 300 IPR009057 -
Car08g01061 310 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 38 307 - -
Car08g01061 310 ProSiteProfiles 'Homeobox' domain profile. 227 290 IPR001356 GO:0003677
Car08g01061 310 SMART KNOX1_2 68 112 IPR005540 GO:0003677|GO:0005634
Car08g01061 310 Pfam KNOX1 domain 70 111 IPR005540 GO:0003677|GO:0005634
Car08g01061 310 ProSitePatterns 'Homeobox' domain signature. 265 288 IPR017970 GO:0000981|GO:0006355
Car08g01061 310 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 38 307 - -
Car08g01061 310 MobiDBLite consensus disorder prediction 170 208 - -
Car08g01061 310 SMART ELK_2 207 228 IPR005539 GO:0003677
Car08g01061 310 CDD homeodomain 239 291 IPR001356 GO:0003677
Car08g01061 310 SMART KNOX2_2 119 170 IPR005541 GO:0003677|GO:0005634
Car08g01061 310 Pfam Homeobox KN domain 247 286 IPR008422 GO:0003677|GO:0006355
Car08g01061 310 Pfam ELK domain 207 228 IPR005539 GO:0003677
Car08g01061 310 Pfam KNOX2 domain 123 169 IPR005541 GO:0003677|GO:0005634
Car08g01061 310 Gene3D - 226 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01061 Car-Chr8 10298854 10306720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01061 1 310 Homeobox Transcription Factor Family AT1G23380 64.438 3.96e-144 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Car08g01061 KNOX2 7.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01061 - - gmx:100794719 487.263