Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01041 ATGGGTTATTTTCGCTGCTTTCTCTGCTCTTATTATTGCAGCTGTTTCGGAGATTTCGATACCGCATTTTTTGACGGCGTCTATATTCTCGGCACAGGGTGGGGATATTGCAGTTTTTCATCGGAATGTTCGTTTGTTGATTCTCTTGTGTGTTACTTCTGGAATTTGCAGGTCAAAATCTTTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGCGAATGAGAGAAACATTATACTCTTCCCTTCTCCTTCAGGATATATCGTTTTTTGACAATGAAACAGTAGGTGATTTGACGAGTAGACTTGGGGCAGATTGTCAGCAAGTTTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTCCTTCAGGGGGGAGGTTCATTGATCTACTTGTTGATTTTGTCTTGGCCACTTGGTTTATGTACATTGGTGATATGCTCCATATTAGCAGCGGTTATGTTACGTTATGGATGGTACCAGAAGAAGGCAGCACGGCTGATCCAAGAAGTCACTGCTTCTGCTAATGATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTTCGAGTTTACGGAACAGAAGAACAAGAACATGGAAGGTACAAATGGTGGCTGGGAAAATTAGCTGACATAAGCTTGCGACAAAGCGCTGCATATGGATTTTGGAATTTTAGCTTCAACTCTCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAATGTCAATTCTTGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGAGACAATGTATCCAATTTGATGCAATCAGTTGGAGCTAGCGAAAAAGTGTTCAACTTAATGGATCTCTCACCTAGCACCCAATTCATAGCAAAAGGAGTAAAGTTGCAGAGTATAACGGGGCATATTGAGTTTGTAAATGTATCTTTTCACTATCCGTCAAGGTCAACGGTATCTGTAGTGCAACATGTAAACTTTGTTGTTCATCCTAGTGAGGTGGTTGCCATTGTTGGTCTTAGTGGTAGCGGGAAAAGCACATTGGTGAATCTTTTGCTCCGACTCTATGAGCCTACAAGTGGTCAGATTTTGATAGACGGTGTCCCTCTTAAAGACTTGGATGTCAAGTGGTGGAGAGAGAGAGTCGGATTTGTGGGACAGGAACCCAAGCTATTCCGGATGGATATTAGCTCAAACATCAGATATGGATGTACCCGAGACGTAACGCAGGAGGATATTGAGTGGGCTGCGAAGCAAGCCTATGCTCATGACTTTATCTCAGCACTTCCTAATGGCTATGAAACACTTGTGGATGATGATCTTTTAAGTGGGGGACAAAAGCAACGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCGAAAATATTGATCCTTGATGAAGCCACTAGTGCACTGGATGCtgaaagtgaacacaatgtgaagGGTGTTCTCCGATCGGTTAGAAGTGATTCTGCATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCTGCTGACAGGATTGTGGTGATGGATAGGGGTCAAATTGTTGAGGTTGGTAATTTCTTGATTTATTTTGAATGCCCTAAGTATTCTTACCAATATTCCTTTTTAAACCTTATTATTCATGATATTTTCATCACCTTTTTTTTTAATTCATTGACATTGTAA 1743 0.405 MGYFRCFLCSYYCSCFGDFDTAFFDGVYILGTGWGYCSFSSECSFVDSLVCYFWNLQVKIFGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGWYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEQEHGRYKWWLGKLADISLRQSAAYGFWNFSFNSLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNVSNLMQSVGASEKVFNLMDLSPSTQFIAKGVKLQSITGHIEFVNVSFHYPSRSTVSVVQHVNFVVHPSEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILIDGVPLKDLDVKWWRERVGFVGQEPKLFRMDISSNIRYGCTRDVTQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRRSVIVIAHRLSTIQAADRIVVMDRGQIVEVGNFLIYFECPKYSYQYSFLNLIIHDIFITFFFNSLTL 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01041 580 Pfam ABC transporter transmembrane region 61 274 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01041 580 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 323 562 IPR003439 GO:0005524
Car08g01041 580 Gene3D - 321 545 IPR027417 -
Car08g01041 580 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 289 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01041 580 CDD ABC_6TM_TAP 62 297 - -
Car08g01041 580 Pfam ABC transporter 342 489 IPR003439 GO:0005524
Car08g01041 580 ProSitePatterns ABC transporters family signature. 461 475 IPR017871 GO:0005524
Car08g01041 580 SMART AAA_5 350 539 IPR003593 -
Car08g01041 580 SUPERFAMILY ABC transporter transmembrane region 56 303 IPR036640 GO:0005524|GO:0016021
Car08g01041 580 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 61 545 - -
Car08g01041 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 546 IPR027417 -
Car08g01041 580 Gene3D ABC transporter type 1, transmembrane domain 65 320 IPR036640 GO:0005524|GO:0016021
Car08g01041 580 PANTHER ABC TRANSPORTER B FAMILY 61 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01041 Car-Chr8 10046059 10052616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01041 78 545 Calmodulin-binding Proteins AT2G36910 33.895 3.55e-68 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01041 - - gmx:100813359 853.973