Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01030 ATGGAATTTGAAGATCAAGAGGAGCAAGAAGAAGAGCTATGTATGGGTGGAGCGAGTTACGACTCGTTACCTAACTCATCCCGAGTTAAGATGCCAGGTGGCAGTGAACCTATTATGGTAACTCACCCTCTCAGAAACATTAACAGCAACAATGGAAACATCAACATCGGTGTCGGAAACGGAAAACCAAGGTATAGAGAGTGTTTAAAGAATCACGCCGTCGGAATCGGCGGTCATTCTCTCGACGGTTGCGGTGAGTTTATGCCGGCGGGAAATGAAGGAACACTCGAATCACTAAAATGCGCCGCTTGTAACTGTCACCGTAACTTCCACCGTAAAGAGACGGACCCAACCGCCGGTGGTGATCCTTATTTCCTAACGCATCATCAACACCACCCGCCACCTCCGCCGCAGTTCGCGGCTTACTATCGAACTCCGACGGGTTACTTACACTTGCCGGGAAACCAGAGGATGGGGACGCTTGCTCTGCCATCAACTTCCGGCGGAGGCGGCGATGGAGGAACGCAGAGCCCGAGGGAGGATCAAGAAGATGTTACGAACCCACCAAGTGGAGGAGGATCGAGTAAGAAGCGGCATAGAACGAAGTTCACTCAGGAACAGAAGGATAAGATGTTGGAATTGGCTGAGAAATTAGGTTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGAGTTTTGTAATGAAAGTGGTGTGAAGCGTCATGTTCTTAAGGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG 780 0.4885 MEFEDQEEQEEELCMGGASYDSLPNSSRVKMPGGSEPIMVTHPLRNINSNNGNINIGVGNGKPRYRECLKNHAVGIGGHSLDGCGEFMPAGNEGTLESLKCAACNCHRNFHRKETDPTAGGDPYFLTHHQHHPPPPPQFAAYYRTPTGYLHLPGNQRMGTLALPSTSGGGGDGGTQSPREDQEDVTNPPSGGGSSKKRHRTKFTQEQKDKMLELAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVWMHNNKHTLGKKP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01030 259 MobiDBLite consensus disorder prediction 153 205 - -
Car08g01030 259 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 114 IPR006456 -
Car08g01030 259 MobiDBLite consensus disorder prediction 159 173 - -
Car08g01030 259 MobiDBLite consensus disorder prediction 1 26 - -
Car08g01030 259 Gene3D - 181 256 - -
Car08g01030 259 Pfam ZF-HD protein dimerisation region 64 115 IPR006456 -
Car08g01030 259 SUPERFAMILY Homeodomain-like 184 257 IPR009057 -
Car08g01030 259 MobiDBLite consensus disorder prediction 180 194 - -
Car08g01030 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 46 258 - -
Car08g01030 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 258 - -
Car08g01030 259 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 64 114 IPR006456 -
Car08g01030 259 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 196 252 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01030 Car-Chr8 9800381 9801588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01030 61 255 ZF-HD Transcription Factor Family AT4G24660 53.846 5.20e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car08g01030 ZF-HD_dimer 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01030 - - gmx:100808910 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01030 08 9800381 9801588 Car07g01857 07 20714932 20715743 PCT