Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01023 ATGGATCCTTTCGCAGGATCCAACTCTGAACCCGAAAACCCGATCTCTACATGCATCTCTCTCCTCTCCAACCGCAACTTCACCGCCTGCAGCGACTTCGCCCGCCGCTTACCACTCTCCGATTCCATCGGCCGAATCCTCACCATCGTTGACGTCCTCGCCGCCCCCGACCTCTACTCCGTCCTCCGTCTCCGCCGCACCAGCCCCATCAACCGTGACCTAGCCCGTCAGCATTACGCCAAGTTCGCAATCCTCTTAGACCCCACAAGCATCGAAAAATTCCCCTTTCAAGATGAAGCCCTAGCACGTGTCCGTGAAGCCTGGCACGTGCTTTCTGACCCCAAAAGGCGCGACCTTTACGACCACGACTTCGAACGCCGCGGTGTCTCCGACCCAACTGCCACGTTTTGGACAGCGTGTCCGTACTGTTGGAACCTTTACATGTACGAGAAGAAATACGTGGGTTGCTCGTTGATGTGTCAGAGTTGTCTTAAATCCTTTCACGGCGTGGCTATTAAGCCGCCGGTGAAAGTGGGTGCTTCTGTGGTGGAAGGGGAGGAGCGGCGGCAGTATTATAAGTGTCGCGCTAGAGTTCCTTTGAAGTTTTATGAGGTGAAGGAAAGTGGTAATGGGAGCTTGATGGGTGAAAATTCAACTGAGTatgtttatgtttctgatgatgatgatgatgatTTGGAGAAAGCTTGCGGGAATGTGGGTAATGGGTGTGTGAGAAATGATGGGTTTGAGAAAGTGATTCAAGGGAATCAAACCGTGAAAATTCAAGGAAATCAGAAAAGGAAAATGAGGGTGAAGACAGTGGCAAGGAAGAGTATGGTGAATAGAATGACAAGACGTGTTGATCTTGATGGTGATTTGGGTTTGGATGCTAAGGATTGTGAATTGGAGTTCACTGATGGAGAAGGTGATGTCTTTGTTGGGTTAGATCAGGGTATGCAACATGTTCGAAATTACTATAACTCTGAAGCACAAATGATCCGAAGCAACTTTCCGCGACCATTCATCTCACAAACTTACAAAAGCAGTTTCACAAAGCAAAAATCAAAGGTAGAGAACAAATTACTGGCAGCTAAGAAACATAGTGAAGCAGAAAAGAGACGTAGAATGCGAATCAACGGTCAATATGAGACCCTCCGCAGTATCCTCCCCAACTTGATCAAAAAGGACAAAGCATCAATACTAGTGGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAAGCATCAAATCTGGAAGAACAAAATCGCGGTACCTTAAAGGAAGTCAAGTTTCCTAGTGGGGGAGACAGATTGAATTTGGAAAAGTGTAATGATGAAGAGGGTTTAGTGAAGGCTACATTGAGTTGTGAGGATAGGCCAGGATTAATGTCATCTATAGCAAGAGCAATAGGGTCAATGAAAGCCAAAGTTGTGAAGACTGAGATGGTGACAGTGGGTGGAAGAACCAAAACTGTGTTGTGGGTGCAAGGTATTGAAAATGAAAGTATGGGGATGCTCAAGAGTACATTGAAAGTTGTAATGCATAAGCCAAGCTTTAAGATGCGGCGATTTCCTCAGTAA 1581 0.4586 MDPFAGSNSEPENPISTCISLLSNRNFTACSDFARRLPLSDSIGRILTIVDVLAAPDLYSVLRLRRTSPINRDLARQHYAKFAILLDPTSIEKFPFQDEALARVREAWHVLSDPKRRDLYDHDFERRGVSDPTATFWTACPYCWNLYMYEKKYVGCSLMCQSCLKSFHGVAIKPPVKVGASVVEGEERRQYYKCRARVPLKFYEVKESGNGSLMGENSTEYVYVSDDDDDDLEKACGNVGNGCVRNDGFEKVIQGNQTVKIQGNQKRKMRVKTVARKSMVNRMTRRVDLDGDLGLDAKDCELEFTDGEGDVFVGLDQGMQHVRNYYNSEAQMIRSNFPRPFISQTYKSSFTKQKSKVENKLLAAKKHSEAEKRRRMRINGQYETLRSILPNLIKKDKASILVETIKQVKELKKKASNLEEQNRGTLKEVKFPSGGDRLNLEKCNDEEGLVKATLSCEDRPGLMSSIARAIGSMKAKVVKTEMVTVGGRTKTVLWVQGIENESMGMLKSTLKVVMHKPSFKMRRFPQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01023 526 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 1 315 - -
Car08g01023 526 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 315 - -
Car08g01023 526 SUPERFAMILY Chaperone J-domain 49 122 IPR036869 -
Car08g01023 526 Pfam DnaJ domain 57 121 IPR001623 -
Car08g01023 526 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 428 IPR036638 GO:0046983
Car08g01023 526 SUPERFAMILY ACT-like 451 518 IPR045865 -
Car08g01023 526 Gene3D - 443 523 - -
Car08g01023 526 CDD ACT_UUR-ACR-like 453 501 - -
Car08g01023 526 Coils Coil 401 428 - -
Car08g01023 526 ProSiteProfiles dnaJ domain profile. 57 124 IPR001623 -
Car08g01023 526 Gene3D - 363 431 IPR036638 GO:0046983
Car08g01023 526 Gene3D DnaJ domain 53 132 IPR036869 -
Car08g01023 526 Pfam Helix-loop-helix DNA-binding domain 366 411 IPR011598 GO:0046983
Car08g01023 526 SMART finulus 368 417 IPR011598 GO:0046983
Car08g01023 526 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 411 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01023 Car-Chr8 9694623 9697712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01023 340 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.000 1.53e-25 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car08g01023 DnaJ 4.3e-07 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01023 - - mtr:MTR_5g032370 437.958