Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01018 atggcgaaggagaagattaagattaagaagatcaacaacgcaacagcgagacaagttactttttcgaaacgaagaagaggcttgttcaaaaaagctgaagaactctccgttttgtgtgaagctgatgttgctctcatcattttctcTTCCACCGGAAAGCTCTTTGAGTATTCTAATTTAAGCATGAGGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTGGCAAAGCCGGAAGAACCATCTCTAGAGTTGCAGCTAGTTGAAAACATCAACTGCTCCAGATTGAGCAAGGAAATTGCTGAGAAGAGTCATCAACTAAGGCAGATGAGGGGAGAAGATCTTCATGGTCTGAATGTTGAAGAATTACAACAATTGGAGAGGTCTCTTGAAATTGGGTTGGAGCGTGTAATGGAAACAAAGGGAGAGAAGATTATGATGGAGATCAATGCCCTCCAAAGAAAGGGAATGCAGCTGATGGAAGAGAATGACCGACTAAAGCAACATTTGGCGAACATGAACAATGGTAACATGTTTGGAGGAGATGAATCAGAGAACGTGGTTAATGAAGAAGGTCAATCCTCAGAATCTGTCACCAACGTTTGTAACTCCACTGGTCCTCCCCAGGACTATGAGAGCTCAGACACATCCCTCAAGTTAGGGCTTCCATATGCCGGTTAG 684 0.3436 MAKEKIKIKKINNATARQVTFSKRRRGLFKKAEELSVLCEADVALIIFSSTGKLFEYSNLSMREILERHHLHSKNLAKPEEPSLELQLVENINCSRLSKEIAEKSHQLRQMRGEDLHGLNVEELQQLERSLEIGLERVMETKGEKIMMEINALQRKGMQLMEENDRLKQHLANMNNGNMFGGDESENVVNEEGQSSESVTNVCNSTGPPQDYESSDTSLKLGLPYAG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01018 227 MobiDBLite consensus disorder prediction 178 227 - -
Car08g01018 227 Coils Coil 150 170 - -
Car08g01018 227 CDD MADS_MEF2_like 13 77 IPR033896 GO:0000977|GO:0045944
Car08g01018 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Car08g01018 227 Pfam K-box region 93 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g01018 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car08g01018 227 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Car08g01018 227 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 224 - -
Car08g01018 227 Coils Coil 94 114 - -
Car08g01018 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car08g01018 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g01018 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car08g01018 227 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Car08g01018 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car08g01018 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car08g01018 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car08g01018 227 MobiDBLite consensus disorder prediction 178 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01018 Car-Chr8 9628381 9632949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01018 1 227 MADS-box Gene Family AT2G22540 68.750 1.12e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car08g01018 K-box 4.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01018 - - gmx:100789126 360.918