Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01017 ATGGCGTGGCTCTTGCTTGGAAAGAAGAGAATATATATGAATTTTACCAGAGCTTTGGCTACAACATCATGTAGGCATTTGGCAGGGTCAAATTTTGCATCTATATTTGCTGAACAATCTGTTTATGCATCAGCAAGATGCATGCCTGATTTAATCAATCACTCGTATCTGGGTGCGGCTTGTTTTAGCAGTGGGACTAAAGAATGTGGAATACGGTGTTTCCACGCTAGCTCACAATTCTGGGCAAGAAGTGATGGGCAATATGGTTTGAAGACCCCAAAGAAGGAGAAGTATGTGAGAAGAGACAGTAGAAATCAGCCTCCTGTGGAAGCTCCATATGTCCCACGTAACGTCACAAAAACCAAATCTAATCCCAATAAAACGATAGAAATATTTGAAGGCATGGCCCTTGTTGAACTGGCAAAGCGTACCGGGAAATCAGTATCTTCTTTGCAAGATATTCTCACAAATGTTGGTGAAAAGATTGAATCAGAGTTTGAGCCTCTCAGTATGGATATTGCCGAGCTTGCTGCAATGGAGGTTGGCGTCAATGTTAAGAGGTTACATTCAACTGAAGGTGCAGAACTTTTACCACGTCCTGCAGTTGTAACAGTGATGGGTCATGTTGATCACGGAAAAACTTCCCTTCTTGATGCCCTGCGTCTAACGTCAGTGGCAGCCAAGGAGGCTGGTGGCATTACTCAGCATCTAGGTGCCTTTGTGGTGGGCATGTCATCAGGAGCATCAATCACATTTCTTGACACTCCTGGTCATGCTGCATTTAGCGCGATGCGGGCGAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGTGTAATGCCCCAAACACTTGAAGCCGTATCCCATGCAAAAGCAGCCAATGTACCAATTGTAGTTGCAATCAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTAAAACTACAGCTCGCTTCTGAGGGCTTGCTGCTGGAGGAAATGGGTGGGGATATTCAGGTTGTTGAAGTTTCAGCGATTAAAAAGACTGGACTGGATAACCTAGAGGTAGCTGTACTCCTTCAGGCTGATATGATGGATCTTAAAGCACGATTTGATGGGCCTGCTCAAGCATATGTGGTTGAAGCAAGACTTGACAAAGGACGAGGTCCATTGGTGACTACTATAGTTAAGGCAGGGACTCTAGTTTGTGGACAGCATGTGGTTATAGGGTCACAGTGGGGAAGAATAAGGGCTATTAAAGATACAGCGGGGAGGTTAACTCAACGCGCAACTCCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCTATGGCTGGTGATGATGTCATTGTTGTTCATTCTGAGGAGAGAGCTAGAATGCTTAGTTCTGGTAGGAAAAAGAAATTTGAAGAGGACAGGCTTAGGAACAAGATGGTGCTAGATACGCCAACTACTTCAGATGATTCTGAGGGGGTTCCACTGAGGGTTGAAATGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTAACAGATGCATTGACAACTTTAAATAGTCCTCAGGTTTCTGTGAATATTGTCCATGTTGGCGTGGGGCCTCTTTCTCAATCTGATGTGGACCTAGCACAGGCTTGCGGTGCATGCATAGTTGGATTCAATGTCAAGAGTCCACCTATTTCTCTTAGCCAGGCAGCAACTCGTGCTAGTATCAAGATAATTCTGCACCGCGTGATTTACCACTTACTGGAAGACATAGCCAGTTTGATCATAGAGAAGGCCCCAGGTACTTCTGAGACGCAGGTAGCTGGGCAAGCAGAAGTGCTGAATATCTTTGAAGTGAAAGGGAGCAAATCTAAGGGACCTGACGTGAAAATAGCTGGTTGTAAGGTTGTTGATGGTTTTGTGAACAGATCAGCAACCATGAGGCTTCTAAGGAGTGGTGAAGTGGTGTTTGAAGGACTTTGTACATCTCTTAAGAGGGAGAAGCAGGATGTGGATTCTGTGAAGAAGGGAAATGAGTGTGGACTTGTTATCAGTAATTGGTCTGATTTCCAAATTGGAGATGTTATCCAATGCTTAGAACAAGTAGTAAGGAAGCCGAAGTTTGTTAAGTCGGAGAGCGGCGCTGTTCGAATAGAGTGCTGA 2160 0.4486 MAWLLLGKKRIYMNFTRALATTSCRHLAGSNFASIFAEQSVYASARCMPDLINHSYLGAACFSSGTKECGIRCFHASSQFWARSDGQYGLKTPKKEKYVRRDSRNQPPVEAPYVPRNVTKTKSNPNKTIEIFEGMALVELAKRTGKSVSSLQDILTNVGEKIESEFEPLSMDIAELAAMEVGVNVKRLHSTEGAELLPRPAVVTVMGHVDHGKTSLLDALRLTSVAAKEAGGITQHLGAFVVGMSSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAVSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDIQVVEVSAIKKTGLDNLEVAVLLQADMMDLKARFDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVIGSQWGRIRAIKDTAGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKKKFEEDRLRNKMVLDTPTTSDDSEGVPLRVEMPVIVKADVQGTVQAVTDALTTLNSPQVSVNIVHVGVGPLSQSDVDLAQACGACIVGFNVKSPPISLSQAATRASIKIILHRVIYHLLEDIASLIIEKAPGTSETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCKVVDGFVNRSATMRLLRSGEVVFEGLCTSLKREKQDVDSVKKGNECGLVISNWSDFQIGDVIQCLEQVVRKPKFVKSESGAVRIEC 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01017 719 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 499 607 IPR036925 -
Car08g01017 719 CDD mtIF2_IVc 608 697 - -
Car08g01017 719 Gene3D Translation factors 371 484 - -
Car08g01017 719 Gene3D - 497 600 IPR036925 -
Car08g01017 719 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Car08g01017 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 365 IPR027417 -
Car08g01017 719 SUPERFAMILY Translation proteins 603 704 IPR009000 -
Car08g01017 719 Pfam Translation-initiation factor 2 498 590 IPR023115 -
Car08g01017 719 Gene3D Translation factors 602 704 - -
Car08g01017 719 TIGRFAM small_GTP: small GTP-binding protein domain 201 353 IPR005225 GO:0005525
Car08g01017 719 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 73 710 IPR015760 -
Car08g01017 719 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Car08g01017 719 Pfam Elongation factor Tu GTP binding domain 203 357 IPR000795 GO:0003924|GO:0005525
Car08g01017 719 CDD IF2_mtIF2_II 374 469 IPR044145 -
Car08g01017 719 Hamap Translation initiation factor IF-2 [infB]. 8 705 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Car08g01017 719 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 73 710 - -
Car08g01017 719 TIGRFAM IF-2: translation initiation factor IF-2 127 702 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Car08g01017 719 Gene3D - 196 370 IPR027417 -
Car08g01017 719 CDD IF2_eIF5B 202 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01017 Car-Chr8 9617706 9623919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01017 189 683 Eukaryotic Initiation Factors Gene Family AT1G76810 26.316 5.56e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01017 K02519 - gmx:100781314 1192.18