Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01009 ATGGATGCAAACCAAAGAGAGAAAATCTATGTTGCTGTTGGTGATGATGCACAAGATGGATTTAATACATTAAATTGGGCTCTCAAAAAATGGAATTCTCATTCAATTTCCATTGTTATTCTCCATGTGACTCACAACATTTCTAAGGATTATGTTTATACACCATTTGGAAAACTTCCGGCAAGATCTTTGAATGATGAGAAACTAGAAGCTCTAAGAAAAGATGAGAAAGAGAGAATCAAGAAGCTTTTTTCTAAATATATTACTTTCTGTGGCAAGGTGCCGGTAGAAATTCATGAAGTTGAAAAATTTGATGAACCGAAGCAAAAACACATCATAGACTTGATCATTGATTTAGGAATCACCAAATTGGTTATGGGATTTTCATTCATGAAGCCTTCTTTGAAATCAAAAGGTGCTATTAGTGGACTATTCTATGTTCATCAACACAAGCCAACTTTTTGTGAATTATTCATTATATGTGTTGGCAAGCAAGTTTTCCTAAGAGGAAACAATGATGAAAAAATCATGGAAGATGATAGTGGAGTGATGGTTGCAAAAATGAGAGATAAGGTAACTTTTAAAGATTGGTTAGACAAAATATTCAGTGACAAAACAAATGATTATTCACAAAATAGTTTAAGTGCATCTCCTTCAACAACCAATTTGGGTCAAAATCAATGGGAATTTTATCTTCAAGACATTGAAAATTATTATCAAGAATTGCTATCTTCAAATTTGGAGGAAGGGAGCTATGACAACTTGCACATTAGTCCAACAATTGAGCCACGTGTCACTCAACAGAACAATTCTAATATGAATACTGCAGAAAAAATTGAGATCCTGAAAAATAAAGTAAATGAAGCTCGCAAAACCATCCAATTGAAGAGAAAAGAGGTCAAGGATAATATAGAAAGAAGCACAAAAGCTGAATGGGCAATTAGCTTATGCAACATTAGGGCTGAAGAAATTGAAGGTAGAATAAGAGAAGAATTGAGCACAAAAGAGGAGCTAAACAAAGAATTAAATTTGGAGAAAGAGCAAAAAGAAGAGACGAGAAGAGAAATAGAAGAGAAAAAACAAAGGCTACATTCATTACTAGAGGTTCAATCAGAACTATCAAACAAGCTTCAAATTTCAACAGTAACAAAATCAAGATCAGAGACACAATTAAAAAGAGCAGTGAAGGAGAGAACCGAAATGGTGAGAGAGATAGAGGAGTTAAGGAAACAGAGAAATGTGTTAAACAGAAGGATTGAGTTTTGTAAACAGAAAGATGCTATTGGCATGGCTGCGAGGTTGGGTGAGAATATCATCAACTGTGGGATGAGGGAGTATAGTGAGGAGGAGTTGAGGTTGGCGACTGATAATTTCTCAGAGAGATTAAGGTTGTTGAAGTGTGGTGGTGGGGATTATAGTAATGTTTATAGAGGACGTTTTAATCATTCTACTGTTGCCATTCAAATGCTGTCTTGTTTTGCTTCTTTGTCTCAACAGGATTTTCAAGCTAAGGTGAGGCTTCTTGGTGGTATTAGGCAACCACATCTGGTTGCCATGGTGGGCTTCTGCTCCGAGCCCAAATGCATAGTTTTGGAATACATGTCAAATGGAAGCTTACGAGATATGCTATTTTCTAGGAGAAGAAACCGGGCCTTAAGGTGGCACGATCGAATACGAATAGCGGCCGAAGTTTGCTCGGGCCTGGGCTTTCTTAATTCAAATGCACAGAGGCCTAATATTCATTGTCATTTGAACTTAGCCAACGTCCTCTTAGACCGTAATTTAGTTGCTAAAATCACGGGCTTTGGGCTTCAAGAGTGTGATGACAAGGAATGCAACGTTGAGTCAGATTTACGGGATGTGGGGGTTTTGTTGATGCAGCTATTGACTGGAAGAAATTGGGTCGGGCCCATTGAGGATGCCTTGACAATGGATATGGACAGAGAGAGTTTGGTTAACATTCTTGATGACATGGCTGGACAATGGCCATTGGATCTAGCAAAAGAAATTGCGGGCCTGGCTATGATTTGCTTGTCCATGAAAAACAAGCCCAACCTAGATCTAACCGTTGCAAGGGTGTTGGAGGAACTCAATATTATAAGAAGAAAGGGTGATGAAATAGTTGCAAATGAATATAGGAATGGTGATAGAGAGGGCTCAAGTGATGTGCCTAGTGTTTTCCTTTGCCCTGTACTTCAGGAGGTAATGAAGAATCCACATGTGGCAGCAGATGGATTTTCATATGAGCTGGAAGCAATAGAACAGTGGTTGAACTCAGGACACAATACATCACCCATGACAAATTTAAGGCTTAACCACACATTCCTTACTCCAAATCACACCCTTCGTTCCTTCCTTGATGAATGGCAGATCAACAAATCAGCTAAAAATGCAAATTAA 2400 0.3808 MDANQREKIYVAVGDDAQDGFNTLNWALKKWNSHSISIVILHVTHNISKDYVYTPFGKLPARSLNDEKLEALRKDEKERIKKLFSKYITFCGKVPVEIHEVEKFDEPKQKHIIDLIIDLGITKLVMGFSFMKPSLKSKGAISGLFYVHQHKPTFCELFIICVGKQVFLRGNNDEKIMEDDSGVMVAKMRDKVTFKDWLDKIFSDKTNDYSQNSLSASPSTTNLGQNQWEFYLQDIENYYQELLSSNLEEGSYDNLHISPTIEPRVTQQNNSNMNTAEKIEILKNKVNEARKTIQLKRKEVKDNIERSTKAEWAISLCNIRAEEIEGRIREELSTKEELNKELNLEKEQKEETRREIEEKKQRLHSLLEVQSELSNKLQISTVTKSRSETQLKRAVKERTEMVREIEELRKQRNVLNRRIEFCKQKDAIGMAARLGENIINCGMREYSEEELRLATDNFSERLRLLKCGGGDYSNVYRGRFNHSTVAIQMLSCFASLSQQDFQAKVRLLGGIRQPHLVAMVGFCSEPKCIVLEYMSNGSLRDMLFSRRRNRALRWHDRIRIAAEVCSGLGFLNSNAQRPNIHCHLNLANVLLDRNLVAKITGFGLQECDDKECNVESDLRDVGVLLMQLLTGRNWVGPIEDALTMDMDRESLVNILDDMAGQWPLDLAKEIAGLAMICLSMKNKPNLDLTVARVLEELNIIRRKGDEIVANEYRNGDREGSSDVPSVFLCPVLQEVMKNPHVAADGFSYELEAIEQWLNSGHNTSPMTNLRLNHTFLTPNHTLRSFLDEWQINKSAKNAN 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01009 799 ProSiteProfiles U-box domain profile. 722 796 IPR003613 GO:0004842|GO:0016567
Car08g01009 799 Gene3D Transferase(Phosphotransferase) domain 1 447 706 - -
Car08g01009 799 SUPERFAMILY Protein kinase-like (PK-like) 449 682 IPR011009 -
Car08g01009 799 SMART Ubox_2 726 789 IPR003613 GO:0004842|GO:0016567
Car08g01009 799 Pfam Protein tyrosine and serine/threonine kinase 467 608 IPR001245 GO:0004672|GO:0006468
Car08g01009 799 CDD RING-Ubox_WDSUB1_like 727 768 - -
Car08g01009 799 Coils Coil 391 425 - -
Car08g01009 799 ProSiteProfiles Protein kinase domain profile. 461 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01009 799 PANTHER OS02G0152300 PROTEIN 5 792 - -
Car08g01009 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 798 IPR013083 -
Car08g01009 799 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 792 - -
Car08g01009 799 SUPERFAMILY RING/U-box 712 794 - -
Car08g01009 799 Coils Coil 272 299 - -
Car08g01009 799 Coils Coil 321 376 - -
Car08g01009 799 Pfam U-box domain 723 793 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01009 Car-Chr8 9515347 9522787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01009 3 799 U-box Gene Family AT5G65500 48.462 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Car08g01009 PK_Tyr_Ser-Thr 1.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01009 - - gmx:100786771 1143.64