Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01008 ATGGCTCGTTCAACCACAACTAATAATAATAACTGGTTATCATTTTCACTCTCACCTATGGAAATGCCTCAGTTTAATCCATACGACGCCGCTTCATCCGTTTCTTCATCTCATCACCATCACTACTTTCTTGATAACTTGTATAACGGATGGGGAAACGGAAACTCAAAGACGGAAGTACAAGAGCAACAACAAGCGCAGTCGATTTTCTTTATGGATTCGTCGAATGGACAGAGTGTGAACCACGCGCCACCACCGAAACTGGAGGATTTTCTCGGGGACAGTAATCAAACGGAGACGCAAGATTCGTCTCTTACTCACATGTACGATCATCAAAATTACTTCGGTGGGGACCACCACCAGGATCTTAACACCATTGCTGGTTTTCAAGCTTTTTCGAACAACTCTGGTGGCTCTGAAGTTGATGATTCTGGTTCTATTGGAAAATCATCGCAACCTGCATGTAATAACGACTTCGGAACTCATTCTATTGAGTCGGGGAACGAGTTTGGTTTCTccaccgccgccgccaccgccgccgcGAACGGTGCTTTGTCTCTCGGTGTTGCTCACAGTTCGGAGGAAACTGGAAGTGCTATCGCTGCTGCTGATTCTGATAGCTCTAAGAAAATCGTTGATACTTTTGGTCAGCGAACTTCGATTTACCGTGGCGTCACTAGGCACAGATGGACGGGTAGATATGAAGCACATCTATGGGATAACAGCTGTAGAAGGGAAGGTCAAGCAAGGAAAGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAAGAAAAAGCCGCAAGATCCTATGATTTGGCTGCTCTCAAGTATTGGGGCCCCACAGCTACTACCAACTTTCCTGTTTCCAATTATGCAAAGGAATTGGAAGAGATGAAACTCGTAACAAAGCAAGAATTTATTGCGTCATTGCGAAGGAAGAGTAGTGGCTTTTCTAGAGGAGCTTCCATCTATAGGGGTGTTACAAGGCACCACCAACAGGGTCGATGGCAAGCACGAATTGGCCGTGTTGCCGGAAACAAAGACTTGTACTTGGGAACATTTGCAACTGAAGAAGAAGCAGCAGAGGCTTATGACATAGCAGCCATAAAATTCCGTGGCGCCAATGCAGTAACAAACTTTGAAATGAACAGATATGATGTGGAAGCTATAATGAAGAGTTCTCTTCCAGTTGGTGGTGCAGCTAAACGCATGAAGCGTTCTCTTGAATTGGAACAGAAAGCTTCTGTCATCAACATTCAGCAGAACAACACCCAACAACAGTATGCTGCAAACCTGAATAAcagcagcagcaacagcatcaatttctcagccattcatcaacagcatcagcaAATTGCTTCCATCCCTTATGGAATTCCGTATGATTCGAATGCGGCTTATTATCATCATCACAACCTGTTCCAACATTTTCAACCCAATACAAATGATGGCAGTGCTGAATCTGTTGCAACTTCCACCAATGCAGGAACTGGTCTCTCTGCTATGCCACCAACTTCAGCAGCTGAGTTCTTTTTATGGCCTAATCAGTCTTATTAA 1557 0.4188 MARSTTTNNNNWLSFSLSPMEMPQFNPYDAASSVSSSHHHHYFLDNLYNGWGNGNSKTEVQEQQQAQSIFFMDSSNGQSVNHAPPPKLEDFLGDSNQTETQDSSLTHMYDHQNYFGGDHHQDLNTIAGFQAFSNNSGGSEVDDSGSIGKSSQPACNNDFGTHSIESGNEFGFSTAAATAAANGALSLGVAHSSEETGSAIAAADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYAKELEEMKLVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRMKRSLELEQKASVINIQQNNTQQQYAANLNNSSSNSINFSAIHQQHQQIASIPYGIPYDSNAAYYHHHNLFQHFQPNTNDGSAESVATSTNAGTGLSAMPPTSAAEFFLWPNQSY 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01008 518 SMART rav1_2 221 293 IPR001471 GO:0003700|GO:0006355
Car08g01008 518 SMART rav1_2 323 387 IPR001471 GO:0003700|GO:0006355
Car08g01008 518 SUPERFAMILY DNA-binding domain 220 289 IPR016177 GO:0003677
Car08g01008 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 515 - -
Car08g01008 518 SUPERFAMILY DNA-binding domain 322 382 IPR016177 GO:0003677
Car08g01008 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 9 515 - -
Car08g01008 518 ProSiteProfiles AP2/ERF domain profile. 323 381 IPR001471 GO:0003700|GO:0006355
Car08g01008 518 PRINTS Ethylene responsive element binding protein signature 222 233 IPR001471 GO:0003700|GO:0006355
Car08g01008 518 PRINTS Ethylene responsive element binding protein signature 363 383 IPR001471 GO:0003700|GO:0006355
Car08g01008 518 CDD AP2 322 381 IPR001471 GO:0003700|GO:0006355
Car08g01008 518 Gene3D AP2/ERF domain 221 289 IPR036955 GO:0003700|GO:0006355
Car08g01008 518 Gene3D AP2/ERF domain 323 383 IPR036955 GO:0003700|GO:0006355
Car08g01008 518 CDD AP2 220 289 IPR001471 GO:0003700|GO:0006355
Car08g01008 518 Pfam AP2 domain 221 279 IPR001471 GO:0003700|GO:0006355
Car08g01008 518 Pfam AP2 domain 323 373 IPR001471 GO:0003700|GO:0006355
Car08g01008 518 ProSiteProfiles AP2/ERF domain profile. 221 287 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01008 Car-Chr8 9479168 9483902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01008 42 518 AP2-EREBP Transcription Factor Family AT5G10510 55.277 8.53e-159 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Car08g01008 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01008 K09285 - gmx:100775390 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01008 08 9479168 9483902 Car07g01880 07 21132894 21136509 PCT