LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car08g01008	ATGGCTCGTTCAACCACAACTAATAATAATAACTGGTTATCATTTTCACTCTCACCTATGGAAATGCCTCAGTTTAATCCATACGACGCCGCTTCATCCGTTTCTTCATCTCATCACCATCACTACTTTCTTGATAACTTGTATAACGGATGGGGAAACGGAAACTCAAAGACGGAAGTACAAGAGCAACAACAAGCGCAGTCGATTTTCTTTATGGATTCGTCGAATGGACAGAGTGTGAACCACGCGCCACCACCGAAACTGGAGGATTTTCTCGGGGACAGTAATCAAACGGAGACGCAAGATTCGTCTCTTACTCACATGTACGATCATCAAAATTACTTCGGTGGGGACCACCACCAGGATCTTAACACCATTGCTGGTTTTCAAGCTTTTTCGAACAACTCTGGTGGCTCTGAAGTTGATGATTCTGGTTCTATTGGAAAATCATCGCAACCTGCATGTAATAACGACTTCGGAACTCATTCTATTGAGTCGGGGAACGAGTTTGGTTTCTccaccgccgccgccaccgccgccgcGAACGGTGCTTTGTCTCTCGGTGTTGCTCACAGTTCGGAGGAAACTGGAAGTGCTATCGCTGCTGCTGATTCTGATAGCTCTAAGAAAATCGTTGATACTTTTGGTCAGCGAACTTCGATTTACCGTGGCGTCACTAGGCACAGATGGACGGGTAGATATGAAGCACATCTATGGGATAACAGCTGTAGAAGGGAAGGTCAAGCAAGGAAAGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAAGAAAAAGCCGCAAGATCCTATGATTTGGCTGCTCTCAAGTATTGGGGCCCCACAGCTACTACCAACTTTCCTGTTTCCAATTATGCAAAGGAATTGGAAGAGATGAAACTCGTAACAAAGCAAGAATTTATTGCGTCATTGCGAAGGAAGAGTAGTGGCTTTTCTAGAGGAGCTTCCATCTATAGGGGTGTTACAAGGCACCACCAACAGGGTCGATGGCAAGCACGAATTGGCCGTGTTGCCGGAAACAAAGACTTGTACTTGGGAACATTTGCAACTGAAGAAGAAGCAGCAGAGGCTTATGACATAGCAGCCATAAAATTCCGTGGCGCCAATGCAGTAACAAACTTTGAAATGAACAGATATGATGTGGAAGCTATAATGAAGAGTTCTCTTCCAGTTGGTGGTGCAGCTAAACGCATGAAGCGTTCTCTTGAATTGGAACAGAAAGCTTCTGTCATCAACATTCAGCAGAACAACACCCAACAACAGTATGCTGCAAACCTGAATAAcagcagcagcaacagcatcaatttctcagccattcatcaacagcatcagcaAATTGCTTCCATCCCTTATGGAATTCCGTATGATTCGAATGCGGCTTATTATCATCATCACAACCTGTTCCAACATTTTCAACCCAATACAAATGATGGCAGTGCTGAATCTGTTGCAACTTCCACCAATGCAGGAACTGGTCTCTCTGCTATGCCACCAACTTCAGCAGCTGAGTTCTTTTTATGGCCTAATCAGTCTTATTAA	1557	0.4188	MARSTTTNNNNWLSFSLSPMEMPQFNPYDAASSVSSSHHHHYFLDNLYNGWGNGNSKTEVQEQQQAQSIFFMDSSNGQSVNHAPPPKLEDFLGDSNQTETQDSSLTHMYDHQNYFGGDHHQDLNTIAGFQAFSNNSGGSEVDDSGSIGKSSQPACNNDFGTHSIESGNEFGFSTAAATAAANGALSLGVAHSSEETGSAIAAADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYAKELEEMKLVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRMKRSLELEQKASVINIQQNNTQQQYAANLNNSSSNSINFSAIHQQHQQIASIPYGIPYDSNAAYYHHHNLFQHFQPNTNDGSAESVATSTNAGTGLSAMPPTSAAEFFLWPNQSY	518

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Car08g01008	518	SMART	rav1_2	221	293	IPR001471	GO:0003700\|GO:0006355
Car08g01008	518	SMART	rav1_2	323	387	IPR001471	GO:0003700\|GO:0006355
Car08g01008	518	SUPERFAMILY	DNA-binding domain	220	289	IPR016177	GO:0003677
Car08g01008	518	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	9	515	-	-
Car08g01008	518	SUPERFAMILY	DNA-binding domain	322	382	IPR016177	GO:0003677
Car08g01008	518	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6	9	515	-	-
Car08g01008	518	ProSiteProfiles	AP2/ERF domain profile.	323	381	IPR001471	GO:0003700\|GO:0006355
Car08g01008	518	PRINTS	Ethylene responsive element binding protein signature	222	233	IPR001471	GO:0003700\|GO:0006355
Car08g01008	518	PRINTS	Ethylene responsive element binding protein signature	363	383	IPR001471	GO:0003700\|GO:0006355
Car08g01008	518	CDD	AP2	322	381	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car08g01008	Car-Chr8	9479168	9483902	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car08g01008	42	518	AP2-EREBP Transcription Factor Family	AT5G10510	55.277	8.53e-159	461

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Car08g01008		AP2	6.1e-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car08g01008	K09285		-	gmx:100775390	659.062

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car08g01008	08	9479168	9483902	Car07g01880	07	21132894	21136509	PCT

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