Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01004 ATGAAGTCAAAGGGCAATCAAGGAAAAGAATATTCAAGCGACGATGAGGTATCACCAAGAGCAATACTAGAAGCCCCTGTTTATGGAACAGAATCAGACAGCAGTGGAAGCAACAGTTTCAGCTCATATTCACCGGATAATTCACCGCCGGTGGAAGCTGCGGCGGAGGAAAAATTGGGCGGTAAAGAAACTCAGGTGCAACAATGGAAATCAATGGTTGATGTTTTCAAGTTCAAATCAGTGAAAAAATTAACAGCAATTCCTATGCTTGTTGCTGTTAGTCATGAAATCACTAAGAAGAGTTTGAATAAGAAATTAGCTCGAATTCGAAGTGCTGAAGAAAGTATTGATATTGGTGCTATTCCTACAAAACCTTCTTGGAGGAATTTTGAATATGCTGAACTTGCAGCTGCTACCAATGATTTCAGTGATGATAACTTGGTTGGAAAAGGTGGTCATGCTGAAGTATACAAAGGAAACTTATCAGATGGTCAAGTTGTAGCTGTAAAAAGACTAATGAAAAACGACAAGGATTTTGCAGATAGAGCAGGCGATTTCTTGACAGAACTTGGAATCATTGCACACATAAACCACCCGAATGCTACGCGCCTTGTCGGGTTTGGTATCGATCGTGGCCTCTACTTTGTCCTACAATTAGCTCCATATGGAAGTCTTTCTTCTTCGCTATTTGGTTCTGAATGCTTGGAGTGGAAGGCAAGGTACAAGGTAGCTATTGGAGTTGCAGAAGGGTTGAATTATCTTCATCAAGATTGCCCGCGCCGAATCATTCACAGAGACATCAAAGCCTCCAACATATTGCTCAATGAAAATTATGAAGCTGAGATATCAGATTTTGGACTTGCAAAGTGGCTCCCAAATAGTTGGACTCAGCATGTTGTTTTTCCTATAGAAGGAACATTTGGTTATTTGGCTCCTGAGTATTTTATGCATGGTATTGTGGACGAGAAGACTGACGTATTCGCGTTCGGGGTTTTGCTATTGGAGCTCATAACCAGTCGTCGTGCGGTTGATTCGGATAGTAGGCAAAGTCTTGTGATCTGGGCCAAGCCACTGCTTGACTCAAACAATGTCAAAGAACTAGCAGATCCAAGATTAGAAGAGAATTATGATCCTACTGAAATGAAGCGTGTCATGTCGACGGCTTCCTTGTGCATCCACCATTCATCTGCCAAACGTCCATTTATGAACCAGGCTGTGCAACTGCTGAAGGGTGAGGAAGCAATTGTAGATTCTAAGCAAAATTCAGCTGCCTCAAAATCAGTTATAGTAGGGGCATGTGACTTAGAAGAATATTCTTGCTCAAATTACTTGAAGGATCTTAACCGCCATAGGGAACTAGTGATGGAATGA 1371 0.4172 MKSKGNQGKEYSSDDEVSPRAILEAPVYGTESDSSGSNSFSSYSPDNSPPVEAAAEEKLGGKETQVQQWKSMVDVFKFKSVKKLTAIPMLVAVSHEITKKSLNKKLARIRSAEESIDIGAIPTKPSWRNFEYAELAAATNDFSDDNLVGKGGHAEVYKGNLSDGQVVAVKRLMKNDKDFADRAGDFLTELGIIAHINHPNATRLVGFGIDRGLYFVLQLAPYGSLSSSLFGSECLEWKARYKVAIGVAEGLNYLHQDCPRRIIHRDIKASNILLNENYEAEISDFGLAKWLPNSWTQHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITSRRAVDSDSRQSLVIWAKPLLDSNNVKELADPRLEENYDPTEMKRVMSTASLCIHHSSAKRPFMNQAVQLLKGEEAIVDSKQNSAASKSVIVGACDLEEYSCSNYLKDLNRHRELVME 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01004 456 MobiDBLite consensus disorder prediction 1 52 - -
Car08g01004 456 Pfam Protein kinase domain 143 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01004 456 MobiDBLite consensus disorder prediction 30 48 - -
Car08g01004 456 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 5 456 - -
Car08g01004 456 PANTHER OS08G0249100 PROTEIN 5 456 - -
Car08g01004 456 MobiDBLite consensus disorder prediction 1 17 - -
Car08g01004 456 ProSiteProfiles Protein kinase domain profile. 142 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01004 456 SUPERFAMILY Protein kinase-like (PK-like) 126 410 IPR011009 -
Car08g01004 456 SMART serkin_6 142 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01004 456 Gene3D Phosphorylase Kinase; domain 1 100 216 - -
Car08g01004 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Car08g01004 456 ProSitePatterns Protein kinases ATP-binding region signature. 148 170 IPR017441 GO:0005524
Car08g01004 456 Gene3D Transferase(Phosphotransferase) domain 1 221 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01004 Car-Chr8 9434844 9440173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01004 115 439 Trihelix Transcription Factor Family AT5G38560 41.714 2.41e-73 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Car08g01004 Pkinase 9.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01004 - - gmx:100818314 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01004 08 9434844 9440173 Car07g01882 07 21148541 21152483 PCT