Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01001 AtgATCCAGGACTTCAATGATACAAACGGCAATTGCCGAATCTTCCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGGTACTTTTGACTTTTCCTGTTTGGCATTTATCTATTTGCTTCACAGCATTTAACTTAAACTATGCTTACGACTTCATTGTACTACATAATCCTCAAATGGATTTACATGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGTCTGTTCATGTTTACAGGCTCGCAACTGCTCAATTAGTAGAGGGTCGAATGTTAAAAAAAGCTTTCAGCAACTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAAGAGCGTACAAAGCCTGCCATTGTGGATGAGATGGAGGTTTATGTCATAGGCTTGGCTGAAATTTTTAGGCTTGGCTCATTTAAAGATGAAGCAAAAGAGATTGTTGAGATGTCAACAGTGGAAGCCTATCGCATGGCTATGAAAAGTGTGGTTAGATGGGTGAGAATGAACATGAAACCTAACAAGACTAGAGTCTTCTTCACTAGCATGTCACATTCTCATGGAAGGCAAGTTTAG 621 0.401 MIQDFNDTNGNCRIFLLSTRAGGLGINLTAADTCILYDSDWVLLTFPVWHLSICFTAFNLNYAYDFIVLHNPQMDLHAMDRCHRIGQTKSVHVYRLATAQLVEGRMLKKAFSNLKLEHVVIEKGQFHQERTKPAIVDEMEVYVIGLAEIFRLGSFKDEAKEIVEMSTVEAYRMAMKSVVRWVRMNMKPNKTRVFFTSMSHSHGRQV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01001 206 Gene3D - 1 180 IPR027417 -
Car08g01001 206 CDD SF2_C_SNF 1 96 - -
Car08g01001 206 PANTHER SNF2/RAD54 HELICASE FAMILY 50 135 - -
Car08g01001 206 PANTHER SNF2/RAD54 HELICASE FAMILY 2 41 - -
Car08g01001 206 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 155 204 IPR026057 GO:0016740
Car08g01001 206 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 132 IPR001650 -
Car08g01001 206 PANTHER BNAC07G16550D PROTEIN 50 135 - -
Car08g01001 206 PANTHER BNAC07G16550D PROTEIN 2 41 - -
Car08g01001 206 Pfam Helicase conserved C-terminal domain 2 86 IPR001650 -
Car08g01001 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 132 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01001 Car-Chr8 9396258 9398197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01001 9 108 RAD5 or RAD16-like Gene Family AT1G05120 31.000 9.32e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01001 K19001 - gmx:100777687 190.66