Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00986 ATGAAGATGGAACATCACATGAATAAAAGGTTTCTATTGTTGTGGTTTATAATGGCTATGCAACTCTGTTTCATGATGCTTGGTGCTTATTCTGAAAATAACAGTAAAAGTTTAATGGGAATTAATCCTCCAGTCAGTATTAAGTATGAAAGAAATTCTAGCCAGGTGGTGATCACAAATGGCATATTTACCCTCTATTTGGCAAATCCCAGGGGGTATGTTAAAGGAATATCATATGGTGGAATGCAGAATTTACTTGCAACTGAAAATGAAGAGGGTGATAGAGGGTACTTGGACGTTGTTTTTGGCAGCTTTGAAAGAGTCCAAGGGACAACTTTCTCAATCGTATCACAAACGATGAATGAAATTGAGGTTTCATTTGTAACGACATGGAATTCTAGAGTAGCTCACTCACAAGTTCCTCTAAACATAGACCAAAGGTATATAGTACGAAGAGGCGATTCAGGATTTTATTCTTACGTGATAATGGAACGATTAGAAGGATTCCCTGCTGTAACAATTGATCAAATAAGGATTGTTTATAAACTTCAGGAAAAACAATTCAACTATATGGCCATCTCAGATACTAGACAAAGAAGAATGCCATCGCCACAAGATAGAGCAGGAGGTCGACCCTTAGCATATAAAGAAGCTGTTCTCTTAACTCATCCATCTGAACCAGAATTTAGGGGAGAGGTGGATGACAAATATCAATACTCAAGTGAGAACCAATACAACAATATTAATGGATGGATTACTGCAGATTCTGAAAAGCCCGTGGGTTTCTGGATCATAACACCTAGTAATGAATTCCGCAATGGTGGGCCTATTAAGCAAGACCTCACATCTCATGTTGGGCCAACTTGTCTATCCATGTTTGTGAGTACCCACTATGGTGGCAAAGAAACAGAAATGGTATTCCAAAATGGAGAGGCTTATAAAAAGGTTTTTGGGCCTATTTTTGTTTACATGAACTCTGCCTCAAGTAAAGCTCACTTCACATCTCTATGGTCAGATGCCAAGCAAAGGTTATCCAATGAACTCAAAAGTTGGCCTTATAATTTCGTTCAATCAAAGGCTTTTGTTCCAGCTAATGAACGGGGAACAGTACTAGGGTCTTTCCAAGTCAACGACTGGGGGAAAGTATCTCCTGCTAATAATGCTTACATTGGTCTAGCAAGCCCTGGAGAAGCAGGATCATGGCAAAGTGAAAGCAAGGGCTATCAATTCTGGACTAGAAGTGACCAACATGGATTCTTTGTTATAAAAAACATTGTACCTGGGAGATACAACTTGTTTGCCTGGGTTCCTGGCTACATTGGAGATTACAAATATAAATATTTAGTCACCATTAGACCAGGAGGCATCATCAAATTGAATTCACTAGTATATTATCCTCCAAGAAATGGCCCTACTCTATGGGCGATTGGCATTCCAGATCGATCAGCTCATGAATTTTATGTACCAGATGCTTATGCTAACCTCACAAACAAATTATACGTCAACGACTTCGAAGACAGGTTTAGGCAATATGGGATATGGCAACGTTACACCGATTTATATCCAAAAAATGATCTCGTTTACAGGGTTGGTGTTGATAATTATAGAAGAGATTGGTTTTATGCTCATGTTCCAAGGTTAACAAATAATAAACTCGAAGCAACCACATGGAAGATTGTATTTGATCTTAAAAGTAATGTAGTGAGGGGTAACTACACACTACAACTGGCAATTGCAAGTGCCACTTATGCTGAAGTGCAGGTTTCATTGAATGACATGAGTGCTTATCCTCCCCACTTCACAACACATCGAATAGGCGATGACAATGCAATAGCAAGACATGGAATCCATGGATTGCAGTTATTTTATAGCATACCATTACCTAGTTCTCGTATGGTAAGAGGAATTAATACAATATTTCTAAGGCAAACAAGATGTGAATCCTTTTTCCAAGGAGTTATGTATGATTATATTCGTTTAGAAAGTCCTAGAGTTTAA 1998 0.3839 MKMEHHMNKRFLLLWFIMAMQLCFMMLGAYSENNSKSLMGINPPVSIKYERNSSQVVITNGIFTLYLANPRGYVKGISYGGMQNLLATENEEGDRGYLDVVFGSFERVQGTTFSIVSQTMNEIEVSFVTTWNSRVAHSQVPLNIDQRYIVRRGDSGFYSYVIMERLEGFPAVTIDQIRIVYKLQEKQFNYMAISDTRQRRMPSPQDRAGGRPLAYKEAVLLTHPSEPEFRGEVDDKYQYSSENQYNNINGWITADSEKPVGFWIITPSNEFRNGGPIKQDLTSHVGPTCLSMFVSTHYGGKETEMVFQNGEAYKKVFGPIFVYMNSASSKAHFTSLWSDAKQRLSNELKSWPYNFVQSKAFVPANERGTVLGSFQVNDWGKVSPANNAYIGLASPGEAGSWQSESKGYQFWTRSDQHGFFVIKNIVPGRYNLFAWVPGYIGDYKYKYLVTIRPGGIIKLNSLVYYPPRNGPTLWAIGIPDRSAHEFYVPDAYANLTNKLYVNDFEDRFRQYGIWQRYTDLYPKNDLVYRVGVDNYRRDWFYAHVPRLTNNKLEATTWKIVFDLKSNVVRGNYTLQLAIASATYAEVQVSLNDMSAYPPHFTTHRIGDDNAIARHGIHGLQLFYSIPLPSSRMVRGINTIFLRQTRCESFFQGVMYDYIRLESPRV 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00986 665 SUPERFAMILY Starch-binding domain-like 363 461 IPR013784 GO:0030246
Car08g00986 665 CDD RGL4_N 47 331 - -
Car08g00986 665 CDD RGL4_M 366 462 IPR029413 -
Car08g00986 665 SUPERFAMILY Galactose mutarotase-like 48 328 IPR011013 GO:0003824|GO:0005975|GO:0030246
Car08g00986 665 Gene3D - 470 661 - -
Car08g00986 665 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 664 - -
Car08g00986 665 Pfam Rhamnogalacturonate lyase family 45 233 IPR010325 -
Car08g00986 665 Pfam Polysaccharide lyase family 4, domain III 472 660 IPR029411 -
Car08g00986 665 Gene3D - 46 341 IPR014718 GO:0030246
Car08g00986 665 Pfam Polysaccharide lyase family 4, domain II 386 456 IPR029413 -
Car08g00986 665 SUPERFAMILY Galactose-binding domain-like 469 661 IPR008979 -
Car08g00986 665 Gene3D - 362 461 - -
Car08g00986 665 CDD RGL4_C 474 661 - -
Car08g00986 665 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00986 Car-Chr8 9236755 9243498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00986 56 663 Polysaccharide Lyase AT1G09910 50.565 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00986 K18195 - gmx:100781089 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00986 08 9236755 9243498 Car07g01888 07 21258200 21265879 PCT