Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00983 atgggaaggggaaagattgtgatacgaaggatcgataattgtacaagtaggcaagtgactttctcaaagagaagaaagggattgataaagaaagccaaagagttagcaatcttatgtgatgcacaagttggacttgttatcttctccagcACTGGAAAGCTTTATGAATATGCAAACACCAGCATGAAATCAGTGATTGAGAGATATAACATTTGCAAGGAAGACCAACAAGTGACAGATCCAGAATCTGAAGTCAAGTTTTGGCAAAGGGAGGCAGACATTTTAAGGCAGGAATTACAGAATCTACAAGAAAACCATCGGCAATTGATGGGAGAACAGCTTTATGGTTTGAGTATCAGAAATCTACAAGATCTAGAGAATCAATTGGAACTGAGTCTCCAAGGAGTCCGCATGAAAAAGGAGAAAATTCTGACAGACGAAATCCAAGAGCTGGACCGAAAGGGAAACATAATCCATCAGGAAAATGTGGAACTTTATAAGAAGGTCTACGGCACAACTGATACCACAACAATTAAACACGCATTTGTTCAATTTCCGTATGGTGTTCGTGGAGGAGGAGAATATCCACAGACATTATTTCAACTTCAGTTATGCCAGCCTGAACAAGAACAGTATTGTGAGACCTCAGGCAGTGCAAGTGCAACAAAATGA 672 0.3125 MGRGKIVIRRIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYANTSMKSVIERYNICKEDQQVTDPESEVKFWQREADILRQELQNLQENHRQLMGEQLYGLSIRNLQDLENQLELSLQGVRMKKEKILTDEIQELDRKGNIIHQENVELYKKVYGTTDTTTIKHAFVQFPYGVRGGGEYPQTLFQLQLCQPEQEQYCETSGSASATK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00983 223 Pfam K-box region 81 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g00983 223 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g00983 223 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Car08g00983 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 219 - -
Car08g00983 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car08g00983 223 Gene3D - 14 108 IPR036879 GO:0003677|GO:0046983
Car08g00983 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car08g00983 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car08g00983 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car08g00983 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car08g00983 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car08g00983 223 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Car08g00983 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car08g00983 223 Coils Coil 85 112 - -
Car08g00983 223 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00983 Car-Chr8 9189517 9198226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00983 1 218 MADS-box Gene Family AT2G22630 58.120 2.66e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car08g00983 K-box 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00983 K09264 - gmx:100795778 344.739