Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00979 ATGATGGAGCTACCAGTTATTTGGATATTATTAAGATTGGTTGTGGCATGTTCTCTTTGTCTTTGTATATTTATCAGATCAGCTTCTGCAACTGAAGGGTTTGAGAGCATAGCATGCTGTGCTGATTCAAATTACACAGATCCATTGACAACCCTAAATTATACATCAGATTACACCTGGTTCTCTGATAAAAGAAGTTGCAGACAAATACCTGAAATTTTGTTAAGCCATAGAAGCAACGAAAACCTTCGACTGTTTGAAATAGATGAGGGGAAGAGATGTTACAATTTGCCAACAATTAAGGATCAAGTGTATTTGATAAGGGGCACGTTTCCATTTGATAGTTTAAATTCTTCCTTTTATGTTTCAATTGGGGTAACACAACTAGGTGAAGTACGATCGTCTAGGCTCGAGGACTTGGAAATTGAGGGAGTTTTCAGAGCCACCAAAGACTACATAGACTTCTGCTTATTGAAGGAAGAGGTCAATCCCTTCATTTCTCAGCTTGAATTAAGGCCATTACCTGAAGAATACCTACATGGTTTCTCTACCGGTGTTCTAAAACTGATAAGCAGAAATAATCTTTGTGGCACAAAAGATGACATCAGGTTCCCAGTTGACCAAAATGATAGAATCTGGAAAGCAACTTCAAGTCCATCATCTGCTCTTCCACTGTCATTCAATGTCAGCAATGTTGAGCTCAAAGGCAATGTGACACCTCCTTTACAAGTCTTACAAACAGCTCTTAATCACTCTGAGCGATTGGAGTTTGTCCACGATGGGCTTGAGACAGAGGATTATGAATACTCGGTGTTTCTCTACTTCCTTGAATTAGATAGCACTCTCAAAGAAGGCCAAAGGGTGTTTGACATCTATCTAAATAATGAGATTAAAAAGGAGAGGTTTGATGTATTGGATGGAGGGTCCAAATACAGTTACACAGTCTTGAACATTTCAGCGAAAGGATCGCTCAATATAACCTTGGTCAAGGCATCTGGATCTAACTTTGGACCCCTTTTGAATGCCTATGAGATCCTACAGGCACGATCGTGGATTGAAGAGACCAACCAAACAGATGTGGAAGTTATTCAGAAGATAAGAGAAAAACTGCTGCTACAAAACCAAGACAATGGAGCATTTGAGAGTTGGACTGGAGATCCTTGTATGCTTTTCCCCTGGAAAGGTATAGCATGTGATGGTTCAAATGGTTCATCTCTTATCACTAAGTTGGATCTTTCCTCCAATAATCTCAGAGGAACAATTCCGTCCAGTGTCACTGAGTTGACCAATTTACAAATATTGAACCTGAGCCACAACCATTTTGATGGTTATATTCCCTTGTTTCCACCATCTTCCTCGTTGACATCAGTAGACCTGAGCTACAATGATCTTTCAGGACAGCTTCCGGAGTCCATTATCTCACTGCCGCATTTAAAATCATTATATTTTGGCTGCAATCAACCCATGAGCGATGAAGATACAGCAAAGTTGAACAGTTCACTAATCAATACAGATTATGGAAGATGCAAAGCAAAAAAACCCAAATTTGGACAAGTTTTGGTGATTGGAGCTATTATTACAAGTGGATCACTTTTGCTTACTTTCGCTGTTGGAATTCTTTTTTTTTGCCGTTATAGACACAAGTCAATTCCTTTGGAAGGATTTGGTGGAAAGACCTACCCAATGGCAACAAATGTAATTTTCTCTTTGCCAAGCAAAGACGATTTCTTCATAAAGTCGGTCTCAGTTAAACCATTCACTTTGGAGTTTCTAGAGCTGGCAACAGAGAGGTACAAAACTTTGATAGGTGAAGGAGGTTTTGGCTCTGTTTACCGGGGCACTCTAGACGATGGTCAGGAAGTGGCAGTAAAAGTCCGTTCAGCAACATCAACTCAGGGAACCCGAGAATTTGATAATGAGCTAAACCTACTTTCAGCAATACAACATGAGAACCTGGTGCCTCTTCTTGGTTACTGTAATGAAAATGATCAACAAATTCTTGTGTATCCTTTCATGTCCAATGGCTCTTTGCTAGATAGACTATATGGGGAACCAGCAAAGAGAAAAATATTAGACTGGCCAACTAGACTCTCTATTGCTCTAGGTGCAGCTCGAGGTTTGGCATATCTTCACACATTTCCAGGACGTTCTGTAATACACAGGGACGTAAAATCGAGCAATATACTTCTGGATCATAGCATGTGTGCTAAGGTTGCAGATTTTGGTTTCTCAAAATATGCTCCTCAGGAAGGAGACAGTTATGTTTCCCTTGAAGTAAGAGGAACCGCAGGGTATCTGGATCCTGAGTACTACAAAACCCAGCAACTATCTGAAAAGAGTGATGTTTTCAGCTTTGGCGTGGTTCTACTTGAAATTGTAAGCGGCCGAGAACCTCTAAACATAAAGAGACCACGGATTGAATGGAGCTTGGTTGAATGGGCCAAACCATACATAAGAGCATCAAAGGTGGAAGAAATTGTAGATCCTGGGATCAAGGGAGGATATCATGCAGAGGCATTATGGAGAGTGGTGGAAGTAGCACTGCAATGTCTTGAACCCTTCTCAGCATATAGGCCGTGTATGGTTGATATAGTTCGCGAGTTGGAGGATGCTCTCATCATCGAAAACAATGCATCTGAATACATGAAGTCAATCGACAGCCTTGGAGGATCCAACCGCTACTCGATTGTCATGGACAAAAGGGTGCTTCCCTCAACTACATCTACAGCAGAATCAACCATCACAATCCAAACCTTATCACACCCACTACCGAGATAG 2778 0.4093 MMELPVIWILLRLVVACSLCLCIFIRSASATEGFESIACCADSNYTDPLTTLNYTSDYTWFSDKRSCRQIPEILLSHRSNENLRLFEIDEGKRCYNLPTIKDQVYLIRGTFPFDSLNSSFYVSIGVTQLGEVRSSRLEDLEIEGVFRATKDYIDFCLLKEEVNPFISQLELRPLPEEYLHGFSTGVLKLISRNNLCGTKDDIRFPVDQNDRIWKATSSPSSALPLSFNVSNVELKGNVTPPLQVLQTALNHSERLEFVHDGLETEDYEYSVFLYFLELDSTLKEGQRVFDIYLNNEIKKERFDVLDGGSKYSYTVLNISAKGSLNITLVKASGSNFGPLLNAYEILQARSWIEETNQTDVEVIQKIREKLLLQNQDNGAFESWTGDPCMLFPWKGIACDGSNGSSLITKLDLSSNNLRGTIPSSVTELTNLQILNLSHNHFDGYIPLFPPSSSLTSVDLSYNDLSGQLPESIISLPHLKSLYFGCNQPMSDEDTAKLNSSLINTDYGRCKAKKPKFGQVLVIGAIITSGSLLLTFAVGILFFCRYRHKSIPLEGFGGKTYPMATNVIFSLPSKDDFFIKSVSVKPFTLEFLELATERYKTLIGEGGFGSVYRGTLDDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNENDQQILVYPFMSNGSLLDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVEEIVDPGIKGGYHAEALWRVVEVALQCLEPFSAYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVMDKRVLPSTTSTAESTITIQTLSHPLPR 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00979 925 SMART serkin_6 596 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00979 925 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Car08g00979 925 Pfam Leucine Rich repeat 451 466 IPR001611 GO:0005515
Car08g00979 925 PRINTS Leucine-rich repeat signature 407 420 - -
Car08g00979 925 PRINTS Leucine-rich repeat signature 428 441 - -
Car08g00979 925 SUPERFAMILY Protein kinase-like (PK-like) 576 868 IPR011009 -
Car08g00979 925 ProSiteProfiles Protein kinase domain profile. 596 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00979 925 Gene3D Ribonuclease Inhibitor 356 509 IPR032675 -
Car08g00979 925 Gene3D Phosphorylase Kinase; domain 1 568 671 - -
Car08g00979 925 Pfam Protein tyrosine and serine/threonine kinase 600 868 IPR001245 GO:0004672|GO:0006468
Car08g00979 925 Gene3D - 192 350 - -
Car08g00979 925 PANTHER OS05G0525400 PROTEIN 63 886 - -
Car08g00979 925 SUPERFAMILY L domain-like 375 489 - -
Car08g00979 925 Gene3D Transferase(Phosphotransferase) domain 1 672 888 - -
Car08g00979 925 Pfam Malectin-like domain 41 346 IPR024788 -
Car08g00979 925 CDD STKc_IRAK 602 869 - -
Car08g00979 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Car08g00979 925 PANTHER OS07G0107800 PROTEIN-RELATED 63 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00979 Car-Chr8 9134482 9142743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00979 10 875 Receptor kinase-like Gene Family AT1G67720 34.812 5.56e-135 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Car08g00979 Malectin_like 2.7e-46 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00979 - - gmx:100781986 1504.19