Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00978 ATGAATTCGAAACAAGTCATCACAAAAGGTGTTGTCGAAACGGTGATCGACATAAAGAAACCAGTGAATTTTACGGGAGGACTCGAGTTTCAATCTCTGACGTATACGGTGACGAAGAAAAAGAAAGTTGATGGAAAATGGTCGAAGGAAGAAGTTGATTTGTTGCATGAGATAACAGGTTATGCACCAAAAGGTTGTGTGACAGCAGTGATGGGACCAAGTGGTGCTGGAAAGTCAACTTTATTGGATGGACTTGCTGGGAGAATAGCAAGTGGGAGTCTTAGAGGGAAAGTTTCATTGGATGGAAATATTGTGAATGCTAGCTTGATTAAAAGAACTTCTGCTTATATAATGCAAGAAGATAGGCTTTTTCCTATGCTTACTGTTTATGAGACTTTGATGTTTGCTGCTGATTTTAGATTGGGACCACTTTCTGTTGCTGATAAGAGGCACAGAGTTGAGAAGCTTATTGACCAGCTTGGATTATCATCATCAAGGAACACCTACATAGGAGATGAAGGAACAAGAGGAGTCTCAGGCGGAGAGCGACGCCGAGTGTCGATCGGCGTTGACATAATCCATGGACCTTCACTCCTCTTCCTTGATGAACCAACTTCAGGACTAGACTCAACAAGTGCACTAAGTGTGATTGAAAAAGTGCATGACATAGCAAGAAATGGAAGCACAGTGATTCTAACAATCCACCAACCATCATCAAGAATACAGTTGCTTCTTGACCATCTCCTCATTCTAGCTAGAGGGCAACTCATGTTTCAAGGCTCACTCAAAGATGTGACTCATCATTTGAACAGAATGGGAAGAAAAGTTCCAAAGGGAGAGAATCCAATTGAGAATCTCATTGATGTTATACAAGAGTATGATCAATGTGATTTTGTTGGTGTTGAGGTTTTAGCTGAGTTTGCACGTACAGGAATGAAACCACCTCTTTTGAGTGACATGGAGGAGATTTCAATGTCTAGTTCTGTTGTTGCACCTTCTCCTTCTTTGAATAGAGAAAAATCTCAAGATTTTTCTTACTCATCACAAGTGAGTAGGAGTTTGAATGATGAGTTTGATCATAGTTTAAGAAGTCCTTATAATAATAATACATCAAGGTCATGGAGTGCTAGTAATAGTGCAGCTTTCTTGAAATTCACTCCCTCAAGACTTAAAAATGAGCACAAGGTGAAGAAGGCTCCAAGTCATGTTGCTTCCCCTGGCTTCTACACATACTCAAGTGAAATCATGCCAGAAACTCCAACACCACATAGCAGTGACTATACATTGAATGAAAATGACTACCTCACACCAACAAATGGATCACAAGAACATCTAGGCCCAAAGTTTTCAAATTCCTACATAGGAGAAACATGGATCCTAATGCGCCGCAACTTCATAAACATCCGGCGAACACCCGAGCTTTTTCTATCAAGACTAATGGTCCTAACCTTCATGGGATTCATGATGGCTACCATGTTCCACAATCCAAAAGACTCATTACAAGGAATCACGAATCGCCTCAGCTTCTTCATCTTCACAGTATGCTTATTTTTCTTCTCTTCCAATGATGCTGTCCCTGCCTTCATCCAAGAAAGGTTCATCTTCATCCGCGAGACATCGCATAACGCCTATCGAGCTTCCTCATACACCATTGCAAGCCTAATCACTCACATGCCGTTTCTTGCACTGCAAGCTTTGTCCTATGCAGCTATAGTTTGGTTTGCTTTAGAACTTAGAGGTCCTTTTCTATACTTTTTCCTTGTTCTCTTCATTTCTCTTCTTTCGACGAATTCATTTGTTGTGTTTGTGAGTTCTGTTGTTCCAAATTATATCTTGGGCTATGCTGCTGTCATTGCCTTCACTGCATTGTTCTTTTTATTCTGTGGATACTTCTTGAGCAGTGAGGATATTCCGATTTATTGGCGTTGGATGAACAAAATTTCGACGATGACATACCCTTATGAAGGACTATTGATGAATGAGTATCAAACTAATGATGCTTTTGGATCAAATGATGGTAAACCTGTTACTGGTTTTGATATTTTGAGAAGTCTTCATATTGGTACTGATGAGATTAAGAAAAGGAATAATGTGCTTATAATGTTAGGTTGGGCTGTTTTATATAGGATTTTATTTTATTCTATTCTTCGTTTTGCATCAAAAAATCAAAGGTCATAG 2178 0.3958 MNSKQVITKGVVETVIDIKKPVNFTGGLEFQSLTYTVTKKKKVDGKWSKEEVDLLHEITGYAPKGCVTAVMGPSGAGKSTLLDGLAGRIASGSLRGKVSLDGNIVNASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGPLSVADKRHRVEKLIDQLGLSSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSALSVIEKVHDIARNGSTVILTIHQPSSRIQLLLDHLLILARGQLMFQGSLKDVTHHLNRMGRKVPKGENPIENLIDVIQEYDQCDFVGVEVLAEFARTGMKPPLLSDMEEISMSSSVVAPSPSLNREKSQDFSYSSQVSRSLNDEFDHSLRSPYNNNTSRSWSASNSAAFLKFTPSRLKNEHKVKKAPSHVASPGFYTYSSEIMPETPTPHSSDYTLNENDYLTPTNGSQEHLGPKFSNSYIGETWILMRRNFINIRRTPELFLSRLMVLTFMGFMMATMFHNPKDSLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASSYTIASLITHMPFLALQALSYAAIVWFALELRGPFLYFFLVLFISLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSEDIPIYWRWMNKISTMTYPYEGLLMNEYQTNDAFGSNDGKPVTGFDILRSLHIGTDEIKKRNNVLIMLGWAVLYRILFYSILRFASKNQRS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00978 725 PANTHER ABC TRANSPORTER G FAMILY MEMBER 19 12 718 - -
Car08g00978 725 Pfam ABC-2 type transporter 457 662 IPR013525 GO:0016020|GO:0140359
Car08g00978 725 Gene3D - 28 276 IPR027417 -
Car08g00978 725 Pfam ABC-2 type transporter 235 292 IPR043926 GO:0140359
Car08g00978 725 ProSitePatterns ABC transporters family signature. 178 192 IPR017871 GO:0005524
Car08g00978 725 Pfam ABC transporter 56 206 IPR003439 GO:0005524
Car08g00978 725 SMART AAA_5 64 262 IPR003593 -
Car08g00978 725 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 12 718 - -
Car08g00978 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 278 IPR003439 GO:0005524
Car08g00978 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 273 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00978 Car-Chr8 9124000 9127227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00978 15 292 Calmodulin-binding Proteins AT2G36910 26.408 8.87e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00978 K05681 - gmx:100804809 1125.15