Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00973 ATGGAACTTTCTCAACTTGGTTTTCTAGATGAGCTACTAGCTCCAAGAAAAGACACATGGAATGCTTTATCAACAACTGGTTTGAATGAGTTACTACTCCCTACTTGTTGTTACACCTTTGACTCTTTTGATGAAAATCTACTCAACAATCCATCTTTGAATCCTTCTTTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTTCTTATGGAACTGATGCTACAACACCATCATACCCTTTTGTTGATGCTTTTACTGTGCCGGAGTTTGATGAGTCAGCACCACTTTTACCTTCAATGGAGGATGAAGCTTTTGGTGGATTTCTTGGAACTGAGAGTAACAAGAGTTTTGAACAAACTAAAATCAACTGCAAAGTTGAGGAACATGTTAATGAGATTCCTGTCTTTAACATGGGTTTGTGTGGTGAGAAGAAGCAGAAATCTAAAAGGGTTGAAGGACAGCCTTCTAAGAATCTTATGGCTGAAAGAAGGAGAAGAAAGCGTTTGAATGATAGGCTTTCTATGTTAAGGTCAATTGTCCCTAAGATCAGCAAGATGGACAGGACATCAATTCTTGGAGATACTATTGATTACATGAAAGAGCTTCTAGAAAGGATTGGTAAGTTGCAAGAAGAAGTGGAAGATGGAACAAATCAGATTAACCTTTTGGGAATTTCTAAGGAGCTAAAGCCAAATGAAGTCATGGTAAGAAATTCACCCAAGTTTGATGTTGAGAGGAGAGACCAGGATACAAGGATCAGCATTTGCTGTGCCACAAAACCAGGATTGTTACTGTCAACTGTGAACACATTAGAAGCATTAGGCCTTGAGATTCATCAGTGTGTTATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCAGAGGCAGCTGGTCAGAGAAATTGTATGAACCCTGAAGAGATAAAGCAATCACTATTCAGGAATGCAGGTTATGGTGGAAGATGTCTCTAA 984 0.3852 MELSQLGFLDELLAPRKDTWNALSTTGLNELLLPTCCYTFDSFDENLLNNPSLNPSFASFSTPLDHRFECSYGTDATTPSYPFVDAFTVPEFDESAPLLPSMEDEAFGGFLGTESNKSFEQTKINCKVEEHVNEIPVFNMGLCGEKKQKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEVEDGTNQINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEAAGQRNCMNPEEIKQSLFRNAGYGGRCL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00973 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 224 IPR036638 GO:0046983
Car08g00973 327 Gene3D - 145 221 IPR036638 GO:0046983
Car08g00973 327 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 327 - -
Car08g00973 327 Pfam Helix-loop-helix DNA-binding domain 161 204 IPR011598 GO:0046983
Car08g00973 327 SMART finulus 161 210 IPR011598 GO:0046983
Car08g00973 327 Coils Coil 201 221 - -
Car08g00973 327 CDD ACT_UUR-ACR-like 253 294 - -
Car08g00973 327 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 327 - -
Car08g00973 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00973 Car-Chr8 9071660 9074177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00973 146 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.033 4.65e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car08g00973 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00973 - - gmx:100806571 511.531