Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00970 ATGTCTCCGGCAGTGGTGGTTACGGAGGAGGAAGGGCGGAACAAACTGTCGTCGACGGTTGTTTCTGCTTCTTCACAATCTTTCTCTCAGATTGGTGCTGATTTGAAAGAAAGGAATTATCTAGGGTTGTCAGATTGTTCATCAGTAGACAGTTGTGATTCAACTGTTCCCAGTTTGTGTGATGAGAAAAAGGAGAACTTGAATTTGAAGGCTACTGAGTTGAGATTGGGTCTTCCTGGATCTCAATCACCCGAAAGGGATTCAGATTTTTACTCAACAAAGCTTGATGAGAAGCCGCTGTTTCCTTTGGTTCCTACAAAAGATGGAATACAGAAGAATGTTGTTTCAGGCAACAAGAGAGGATTTGCTGATACAGTAGATGGGTTTTCTCAGGTGAAGTTTAATGGTAATACAGGGATTAATGGGATGCTATCGCCTAGACCTGTTGGAGCACAGCCCAACACGGTGAAAGAAATGCCCAACAAGGTGTTGCAGGAAAGGCCTTGTGCTGCTAGAGGAACTGGTCATAATCAAGCTGGTGCTGCTTCTGTTGGTGGTTGTGCACCGGCATCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCGATGGCCACTGCTTCTAAGAACAACAACGATGAAGTGGATGGAAAACCAGGTCCCACTGCACTCTTTGTTAAGGTCAGCATGGATGGGGCTCCCTATCTTAGGAAGGTTGATCTAAGAACTTATACAACATATCAGGAATTATCTTCTGCCCTTGAGAAGATGTTTAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGTGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAGGGACCTTTTGCATGGTTCAGAATACGTTCTCACCTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCTTGGGAGATGTTCATTGAAACTTGCAGAAGGCTGAAGATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCCGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG 1047 0.4508 MSPAVVVTEEEGRNKLSSTVVSASSQSFSQIGADLKERNYLGLSDCSSVDSCDSTVPSLCDEKKENLNLKATELRLGLPGSQSPERDSDFYSTKLDEKPLFPLVPTKDGIQKNVVSGNKRGFADTVDGFSQVKFNGNTGINGMLSPRPVGAQPNTVKEMPNKVLQERPCAARGTGHNQAGAASVGGCAPASKAQVVGWPPIRSFRKNSMATASKNNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRTYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCRRLKIMKGSDAIGLAPRAMEKSKSRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00970 348 Gene3D - 225 342 - -
Car08g00970 348 SUPERFAMILY CAD & PB1 domains 226 329 - -
Car08g00970 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Car08g00970 348 Pfam AUX/IAA family 72 339 IPR033389 -
Car08g00970 348 PANTHER AUXIN-INDUCED PROTEIN 20 341 - -
Car08g00970 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 341 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00970 Car-Chr8 9008046 9013713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00970 230 333 B3 DNA Binding Superfamily AT5G37020 32.692 1.23e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car08g00970 AUX_IAA 3.7e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00970 K14484 - gmx:547502 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00970 08 9008046 9013713 Car07g01896 07 21384937 21390488 PCT