Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00958 ATGAATCTGTGGACTGACGACAACTCATCAGTAATGGAGGCTTTTATGACCTCCTCCGATTTATCCTCCATGTGgccaccggtgccgccgccacagccgccgcAATCAACTACTGGATTCAGTCAAGACACACTCCAACAAAGACTTCAAGCGTTAATTGAAGGGGCAACGGAAACGTGGACTTACGCTATCTTCTGGCAACCTTCGTATGACTATTCCGGTACCTCTCTTGGTTGGGGTGACGGTTACTATAAAGGTGAAGAAGACAAAACAAAAGCAAAATCAAAAACAAAAGCTACTTCACCCGCTGAACAAGAACACCGTAGAAAAGTTCTCCGTGAACTTAATTCTCTAATATCTGGTAATCCAACGCCGGACGATTCCGCCGTCGATGAAGAAGTCACCGACACCGAGTGGTTCTTTTTAGTTTCCATGACACAGTCTTTCGTCAACGGAAGTGGACTTCCCGGACAAACTTATTTTAACTCAACTCCGGTGTGGTTAACTGGCGGCGAGAATCTCGCCGTCTCGCCTTTCGAGAGAGCGAGAGAGGGACAGGAACTCGGCTTACAAACGCTAGCTTGTATACCGTCGGCGAACGGCGTGTTGGAGCTTGGATCCACTGAATTGATTTATCAAAACAACGATCTCATGAATAAAGTGAAGATGTTATTCAATTTCAACAATAGCTTTGAATTAGGATCTGCGTGGCAGTTAGGGTTAGGTTCTTCTACAATTGCTCATCAAGTaacaacaacaacaacaacgaacaCTTCAATTTCAATTCCAAGTCACAATAATGTTACAAAGACGTTACAGTTTGAAACTCATGGTTCAAGTACTTTAACGGAAGTTCCTGGTGCTGTTCATGTTTCACAGAAGCAGAATCAAAGTTTCTTTTCTAAGGAAATGAATGTTTTAGAATACGGTGCGAGTaataacaataacaataacaatcagcaacatcaaCGTTTATTGAAGCCAGAATCTGGTGAGATTCTGAGTTTTGGTGATAGTAAAAAGAGTTCTTATGTTGCTAATAATGGAAATTCGAATTCGAATTTCTTCTCCGGTCAATCGCAGTTAGTTTCCGTTGCTGAGGAGAACAACAATAATGGAAATGGAAAGAAGAGATCCCCAAATTCGAGAGGAAGTAACAACGATGACGGAATGCTTTCTTTTACTTCCGGTGTGATTGTTCCACCAGCCGGGTCGAATTTGAAATTTTCTGGTGGTACAGGTGGTGGTGGTGATTCGGACCATTCGGATCTGGAGGCTTCGGTGGTGAAAGAGGTGGATAGCAGCCGCATGGTGGAGCCTGAAAAACGGCCGAGGAAGAGAGGGAGGAAGCCGGCGAATGGAAGGGAGGAACCATTGAATCATGTTGAAGCTGAGAGACAAAGAAGAGAGAAATTGAATCAGAGATTCTATGCTCTTCGTGCAGTTGTTCCTAATGTTTCAAAGATGGATAAAGCTTCGCTTTTGGGAGATGCTATATCTTACATTACTGAACTCAAAACAAAGCTTCAGAAAACGGAATCTGATAAAGATGTATTAGAAAAGGAAATTGATGAAGTGAAGAAGGAGCTTCAGAAAATTAATGAAAACTCGTCTAATCCATCACAACCACAACCATTACACAATAAACCCTCTTCGAATAAAGCTTTAATCAATTTGGATATCGACGTGAAGATTATAGGTTGGGATGCAATGATAAGAATCCAATGCAGTAAGAAAAACCACCCTGCAGCGAGGTTGATGGCAGCGTTGATGGAGCTTGACCTTGAAGTGCACCATGCCAGTGTGTCAGTGGTGAATGATTTGATGATACAACAAGCAACAGTGAAGATGGGGGGTCGATTTTACACCCAGGAGCAGCTTAGGGCAGCATTGTCATCTAAAGTTGGGGGTGTTTCATGA 1920 0.4083 MNLWTDDNSSVMEAFMTSSDLSSMWPPVPPPQPPQSTTGFSQDTLQQRLQALIEGATETWTYAIFWQPSYDYSGTSLGWGDGYYKGEEDKTKAKSKTKATSPAEQEHRRKVLRELNSLISGNPTPDDSAVDEEVTDTEWFFLVSMTQSFVNGSGLPGQTYFNSTPVWLTGGENLAVSPFERAREGQELGLQTLACIPSANGVLELGSTELIYQNNDLMNKVKMLFNFNNSFELGSAWQLGLGSSTIAHQVTTTTTTNTSISIPSHNNVTKTLQFETHGSSTLTEVPGAVHVSQKQNQSFFSKEMNVLEYGASNNNNNNNQQHQRLLKPESGEILSFGDSKKSSYVANNGNSNSNFFSGQSQLVSVAEENNNNGNGKKRSPNSRGSNNDDGMLSFTSGVIVPPAGSNLKFSGGTGGGGDSDHSDLEASVVKEVDSSRMVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLQKTESDKDVLEKEIDEVKKELQKINENSSNPSQPQPLHNKPSSNKALINLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLEVHHASVSVVNDLMIQQATVKMGGRFYTQEQLRAALSSKVGGVS 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00958 639 Coils Coil 502 536 - -
Car08g00958 639 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 459 526 IPR036638 GO:0046983
Car08g00958 639 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 456 505 IPR011598 GO:0046983
Car08g00958 639 MobiDBLite consensus disorder prediction 368 393 - -
Car08g00958 639 SMART finulus 462 511 IPR011598 GO:0046983
Car08g00958 639 MobiDBLite consensus disorder prediction 533 552 - -
Car08g00958 639 Pfam Helix-loop-helix DNA-binding domain 460 505 IPR011598 GO:0046983
Car08g00958 639 PANTHER TRANSCRIPTION FACTOR MYC2 38 636 - -
Car08g00958 639 MobiDBLite consensus disorder prediction 368 466 - -
Car08g00958 639 MobiDBLite consensus disorder prediction 88 108 - -
Car08g00958 639 MobiDBLite consensus disorder prediction 423 466 - -
Car08g00958 639 MobiDBLite consensus disorder prediction 20 40 - -
Car08g00958 639 CDD bHLH_AtAIB_like 453 529 - -
Car08g00958 639 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 225 IPR025610 -
Car08g00958 639 Gene3D - 448 537 IPR036638 GO:0046983
Car08g00958 639 PANTHER MYC 38 636 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00958 Car-Chr8 8837076 8839070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00958 1 636 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.235 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car08g00958 bHLH-MYC_N 1e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00958 K13422 - gmx:100790168 776.548