Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00948 ATGGCAACTTTAAAATCACCCGTAACTCTATTCACACCTAAACCTTTCTCAAATACTAACTACCCTTTCCTCGCTAAATCACCTTTTTCCGTTAAACTCCATTCTTCACTTTTCTCTCACAACCACAAACTTCAATTTTCTTCCTCCAAAACCCCAATATTCTGCTTTGCGTTGCAAGATGTAGCACCATCGCCAATTCAAGAGGAAATAACAGATACATTAAATAACGTTAAGAAGAAGAAGCTCTGTGTCTTTAACTTACCTTGGTCTCTCTCCGTGACAGATATCAAAGACCTCTTCGCCCAATGCGGAACCGTTATCGACGTCGAGATTATAAAGAGCAAAGATGGGAAGGGAAGAGGTTATGCATTCGTTACTATGGATTCAGGAGAGGAAGCTAAGGCTGCTGTTGATAAATTTGATGCTTATGTAATATCAGGCCGGATAATAAGGGTAGAGTTTGCAAAAAGATTCAAGAAAcctcctcctcctccatctcgtccaagtccccctcctAGCGAGGCACGTTATGTAATTTATGCATCCAACCTTACATGGAAAGCAAGATCTACACATCTCAGAGACGTCTTCACTGAGAATTTCAAATCACCAGTTTCAGCCAGGGTTGTCTTTGAAAGCCCTGCTGGAAGATCTGCTGGGTATGGATTTGTATCTTATCATACGATGGAGGAAGCAGAGGCTGCCATTTCTGCTTTGGAAGGGAAGGAGTTAATGGGACGACCACTTCGTGTAAAAATAAGTGAAAAGAAAGTTAAAGAAGCTGGAAGTGTAGAAAGTGAAGACCAAGATGATGATGCTCAACAGGAAGAGTCATAA 837 0.3883 MATLKSPVTLFTPKPFSNTNYPFLAKSPFSVKLHSSLFSHNHKLQFSSSKTPIFCFALQDVAPSPIQEEITDTLNNVKKKKLCVFNLPWSLSVTDIKDLFAQCGTVIDVEIIKSKDGKGRGYAFVTMDSGEEAKAAVDKFDAYVISGRIIRVEFAKRFKKPPPPPSRPSPPPSEARYVIYASNLTWKARSTHLRDVFTENFKSPVSARVVFESPAGRSAGYGFVSYHTMEEAEAAISALEGKELMGRPLRVKISEKKVKEAGSVESEDQDDDAQQEES 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00948 278 PANTHER CHLOROPLAST, PUTATIVE-RELATED 15 269 - -
Car08g00948 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Car08g00948 278 SUPERFAMILY RNA-binding domain, RBD 69 168 IPR035979 GO:0003676
Car08g00948 278 SUPERFAMILY RNA-binding domain, RBD 160 259 IPR035979 GO:0003676
Car08g00948 278 SMART rrm1_1 178 252 IPR000504 GO:0003723
Car08g00948 278 SMART rrm1_1 81 153 IPR000504 GO:0003723
Car08g00948 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 150 IPR000504 GO:0003723
Car08g00948 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 250 IPR000504 GO:0003723
Car08g00948 278 CDD RRM_SF 82 153 - -
Car08g00948 278 PANTHER OS02G0815200 PROTEIN 15 269 - -
Car08g00948 278 MobiDBLite consensus disorder prediction 255 278 - -
Car08g00948 278 Gene3D - 160 269 IPR012677 -
Car08g00948 278 Gene3D - 59 159 IPR012677 -
Car08g00948 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 256 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00948 Car-Chr8 8712343 8716311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00948 61 257 Eukaryotic Initiation Factors Gene Family AT4G34110 29.353 1.22e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00948 - - gmx:100792275 293.893