Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00947 ATGGCTTCTCTTGAAAATCCAAAAGCTTTGGTTCCATACATGAACAAAGATTGTTCACAAGGTTTTTGTAGCTTCTTTTGTCCACAATGGTGTTATGTAATCTAtcctcctcctcctcctccttcatcctTTGAATTTCCTGATGATGATTCATCTCCAAATTTCTCACCTCTTGTCATTGCAGTCATTGGAATCTTAGCAAGTGTTTTTCTTCTTGTAACTTACTACACCATAATATCAAAGTATTGCGGCCGAAGAGAATCATCTTCGAGCGAAACCCACGAACCAAACGATGAATCGGATGAAAATCATCATCATAACAATCATTTAATCCATGAGCCATGGCATGTTACAACAAATGGCTTAGATGAAAATTTGATTAAGTCCATAACAATTTATAAGTACAAAAAATATGATGGATTGGTTGGTGTAAGAGATTGTTCAATTTGTCTCAATGAGTTTGAAGATGATGAAAGTATTAGACTTTTACCTAAATGTAGCCATGCTTTTCATCTTCCTTGTATTGATACATGGCTCAAATCTCACTCGAATTGTCCTCTATGTCGCGCTACTATTTTCGCCTTCAATGCCTCGAGTACTAGTGCAACACTTCATGTGCCTTCAATGAATGAAATTTCATTAGAAAATCCACATTTGAATGAAAATATGAATGTTGAAAGAGATAGTACTAATGAATTGGATGTAGTGGAAGAAGGAATGTTGCATGATCATGGTAGAGAATTTCGCGCTTTAAGTGATTTAGGAAATTTAAGAGGAAGACACAGTGTGATTGAGATTAGAGACAATAATGAAAATTACGAATCGATTCGAAGATCATTCTCTATGGATCATTCATTTCAAAGTGGCCATGTTATGCATATGAATCATCATGAGCAAGATTCACAAGTTGAAGGAAGTACTAGTGAAGTTGTTGGTTCATCAAAGAGATCAAGAAGTGAAAATGAAAATAGTAAATTCAATGGTTATAGTAGAAAAGTTTTGCATTGTGTTTTAAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTCCTTAGTAGAAGTGGCAGAGGAAGAAGGTTGGGAGTTTTGCCTGTTTGA 1107 0.3388 MASLENPKALVPYMNKDCSQGFCSFFCPQWCYVIYPPPPPPSSFEFPDDDSSPNFSPLVIAVIGILASVFLLVTYYTIISKYCGRRESSSSETHEPNDESDENHHHNNHLIHEPWHVTTNGLDENLIKSITIYKYKKYDGLVGVRDCSICLNEFEDDESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRATIFAFNASSTSATLHVPSMNEISLENPHLNENMNVERDSTNELDVVEEGMLHDHGREFRALSDLGNLRGRHSVIEIRDNNENYESIRRSFSMDHSFQSGHVMHMNHHEQDSQVEGSTSEVVGSSKRSRSENENSKFNGYSRKVLHCVLSPIAMKRSFSSGRFFLSRSGRGRRLGVLPV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00947 368 Pfam Ring finger domain 146 189 IPR001841 -
Car08g00947 368 CDD RING-H2_PA-TM-RING 146 189 - -
Car08g00947 368 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 358 - -
Car08g00947 368 SMART ring_2 147 188 IPR001841 -
Car08g00947 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 196 IPR013083 -
Car08g00947 368 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Car08g00947 368 MobiDBLite consensus disorder prediction 296 324 - -
Car08g00947 368 SUPERFAMILY RING/U-box 127 194 - -
Car08g00947 368 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 358 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00947 Car-Chr8 8708074 8709845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00947 6 361 C3H Transcription Factor Family AT5G17600 41.935 9.49e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00947 - - gmx:100792267 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00947 08 8708074 8709845 Car07g01913 07 21842528 21843790 PCT