Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00944 ATGGGTAACGCTCACGGACATCGCAAACACCGTAATAACGTTCCTCCTCTTTATAAATTTGGTAACACTCACCCTCCTAGTAATCAACCAAACAAAAACGAAGGTAGTTCCAATTCTAACACCGTGATGAATTTTCCTTACGGTCACGTCGACAACACTCTCCGTTCTCTCGCCGCTCAGGCAGAAGGATTTGGCCGCTTCGCAATCGGTGGACTTCACGGTCCCCTTTATCATGTTACGTCACTCTTAGATGATGGACCGGGATCATTGCGTGACGCGTGTCGCAGAAAAGAACCTTTGTGGATTGTGTTTGAGGTTTCAGGTACAATTCATCTTTCTTCTTACTTGAGTGTGTCTTCATACAAGACCATTGATGGAAGGGGACAAAGGATTAAGCTGACTGGAAAGGGTTTTCGGCTGAAGGAATGTGAACATGTAATCATTTGTAATTTAGAGTTAGAAGGAGGCAGAGGACCTGATGTTGATGCTATTCAAATCAAACCTAATTCAAAACATATATGGATTGATCGTTGCACTCTAAGTGATTTTGAAGATGGGCTCATAGATATCACTCGAGGAAGCACCGATATTACTATTTCAAGGTGTCACTTTTATCAGCATGACAAAACAATACTCATTGGATCAGATCCCTCACATGTTGATGACAGATGCATGAAGATCACCATACACCACTGTTTTTTTAACGGGACTCGACAGAGACATCCTCGTGTTAGGTTTGCAAAAGTACACCTGTACAATAATTACACCAGAAACTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATTTTCGCAACATAATATCTATGAAGCTGGCCAGAAGAAGGTTGCTTTCAAGTATCTTACTGAGAAGGCAGCAGACAAGGAAGCTGGAGCAACTGGTCACATAATCTCCGAAGGCGACTTGTTTTTAAATGGGGCTACAGCAGGGTTGATGACAGAGGATGTTGGGTGTAAGATGTTTCATCCCACTGAACACTATCTCTCATGGACGATCGAACCTCCTACCGATGATCTAAAGCAAGTTCTTCATCGCTGCACGGGATGGCAATCTGTTGCGAAGCCAGATGATCAAACAGTTTGTGCCGAATAG 1122 0.4332 MGNAHGHRKHRNNVPPLYKFGNTHPPSNQPNKNEGSSNSNTVMNFPYGHVDNTLRSLAAQAEGFGRFAIGGLHGPLYHVTSLLDDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGFRLKECEHVIICNLELEGGRGPDVDAIQIKPNSKHIWIDRCTLSDFEDGLIDITRGSTDITISRCHFYQHDKTILIGSDPSHVDDRCMKITIHHCFFNGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEKAADKEAGATGHIISEGDLFLNGATAGLMTEDVGCKMFHPTEHYLSWTIEPPTDDLKQVLHRCTGWQSVAKPDDQTVCAE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00944 373 Pfam Pectate lyase 116 278 IPR002022 -
Car08g00944 373 PRINTS Pollen allergen Amb family signature 60 77 IPR018082 -
Car08g00944 373 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Car08g00944 373 PRINTS Pollen allergen Amb family signature 262 281 IPR018082 -
Car08g00944 373 SUPERFAMILY Pectin lyase-like 60 361 IPR011050 -
Car08g00944 373 MobiDBLite consensus disorder prediction 22 44 - -
Car08g00944 373 Gene3D - 47 342 IPR012334 -
Car08g00944 373 SMART amb_all 107 285 IPR002022 -
Car08g00944 373 MobiDBLite consensus disorder prediction 1 44 - -
Car08g00944 373 PANTHER PECTATE LYASE 18-RELATED 39 365 IPR045032 GO:0030570
Car08g00944 373 PANTHER PECTATE LYASE 39 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00944 Car-Chr8 8672316 8675328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00944 82 370 Polysaccharide Lyase AT3G55140 73.702 5.22e-165 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00944 K01728 - gmx:100814368 635.95