Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00942 ATGGCCAAAAAGAAACAGAAGGAGCCTCAACAAACCCCTCAAAACGATACCGTTTCACCCCCTTCCAGCATTTTCAACACCCTCTTCGGCAACGCATCGGAACAAATCACACCCACCGCCGCTTCTCTATTTTCCGATGACAATCCCTTCAAGAGAAAGCCTGCTAAATCTACTTCCGTTTCCGACGTAACCGACAAAACTCTGAACCCCGAAAACGCCGTCGTCgatgaaaagaagaggaagaggaagaaagagaaaAGCCCCGTGCTTGATTCAGATTCCAAAATCGAAGTTTCAGAGAAAAAGAAGAAGAAGAAGAAGAAAAGCGGTTTAGGTGAAAAGGAGGAGAAAGAAAAAGATAATGATAATGAGAATGAGGTTAGTTTGGGTGATGAAGAGGGGAAGACGAAGAAGAAGAGGAAAAGGGATGAAGTTGAGAAAGAGTGGGATGAGAAGAAGTTTGGGATGGTTGAAAGGGAAGAGCTTGGGAATGAAACAGTTGGGAACAAGAGAAAAGTGCGTCATAATCCAGCAGATATGTTGGTTTCAAAAGAAGGTTTTGATGATGAGGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCTCTTAAGGTTAAAAAGAAGACTTTGTTGAAGGAGTTTAAGATATTTGGTGAGGTTGAATCTGTTAGGATTCGCTCTGTTCCTTTACAAGATACCAAAAAACCTAGAAAGGGAGCCATCCTTTCGAAGATGATCAATGAATTGGCTGAAAGTGTCAATGCCTACATTGTTTTCAAAACCGAGGAATCTGCTCAGGCTTCATTGTCCCATAACATGACTGTGATTGAAGGAAATCACATCCGTGTTGATAGGGCCTGCCCACCTCGCAAGAAACTTAAAGGGGACAGTTCTCTGCTTTATGATAATAAGAGAACTGTTTTTGTGGGCAATCTTCCATTTGATGTGAAGGATGAAGAGCTTTATAAGCTATTTTGTGGTATATCCAACCTAGAATCAAGTATAGAAGCTGTTAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGAATTGCCTATGTGCTATTTAAAACAAGGGAAGCTGCCAATTCCGTTCTTAAGAAACGGTCCTTGAAGCTTCGTGATCGTGAATTGAGACTAAGTCATGCTAAAGCAGATGCTACTCCTTCTAAAAGGCCTTATTCTCCAGCAGCACGACCCAGTCATGGCAAAGCAGATGCTACCCCATCTAAAAGACCATACTCTCCAGCAGCACGAGCTCATAGTACCCCTGCAAAGAAGTTCTCAGGGGCTTCAAGGTCTCCTTCAAGCAGTAATAACAGGGCAAACAAAAATGCTACTGCATCTTATCAGGGTCTGCGTGCAACCAAATCTGATGTCCACAAGAAAAGTCATGGTGGTGAAAAACCGAAAGAGCGCACGAAGAAAAGACCAACAGTAGCTGCCAGAAAGGCTAAAGCAAACTTGCAGAAAGAAGGTGGCACACCAAAACAAACAGGGTCAAAACGCAAGTTTGATAGTCGTACTCCTGATAGCTCCCGACGGATTAATAAAGCCCAAAAGAAGAGGTAG 1578 0.4195 MAKKKQKEPQQTPQNDTVSPPSSIFNTLFGNASEQITPTAASLFSDDNPFKRKPAKSTSVSDVTDKTLNPENAVVDEKKRKRKKEKSPVLDSDSKIEVSEKKKKKKKKSGLGEKEEKEKDNDNENEVSLGDEEGKTKKKRKRDEVEKEWDEKKFGMVEREELGNETVGNKRKVRHNPADMLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKIFGEVESVRIRSVPLQDTKKPRKGAILSKMINELAESVNAYIVFKTEESAQASLSHNMTVIEGNHIRVDRACPPRKKLKGDSSLLYDNKRTVFVGNLPFDVKDEELYKLFCGISNLESSIEAVRVVRDPHLNVGKGIAYVLFKTREAANSVLKKRSLKLRDRELRLSHAKADATPSKRPYSPAARPSHGKADATPSKRPYSPAARAHSTPAKKFSGASRSPSSSNNRANKNATASYQGLRATKSDVHKKSHGGEKPKERTKKRPTVAARKAKANLQKEGGTPKQTGSKRKFDSRTPDSSRRINKAQKKR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00942 525 MobiDBLite consensus disorder prediction 499 518 - -
Car08g00942 525 PANTHER RNA-BINDING PROTEIN 34 45 524 - -
Car08g00942 525 MobiDBLite consensus disorder prediction 109 145 - -
Car08g00942 525 Gene3D - 191 294 IPR012677 -
Car08g00942 525 MobiDBLite consensus disorder prediction 383 525 - -
Car08g00942 525 MobiDBLite consensus disorder prediction 458 477 - -
Car08g00942 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 289 IPR000504 GO:0003723
Car08g00942 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 387 IPR000504 GO:0003723
Car08g00942 525 SMART rrm1_1 196 285 IPR000504 GO:0003723
Car08g00942 525 SMART rrm1_1 307 383 IPR000504 GO:0003723
Car08g00942 525 MobiDBLite consensus disorder prediction 11 44 - -
Car08g00942 525 CDD RRM1_RBM34 195 285 IPR034220 -
Car08g00942 525 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 524 - -
Car08g00942 525 SUPERFAMILY RNA-binding domain, RBD 302 398 IPR035979 GO:0003676
Car08g00942 525 MobiDBLite consensus disorder prediction 71 100 - -
Car08g00942 525 CDD RRM2_RBM34 307 383 IPR034221 -
Car08g00942 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 380 IPR000504 GO:0003723
Car08g00942 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 239 IPR000504 GO:0003723
Car08g00942 525 Gene3D - 301 394 IPR012677 -
Car08g00942 525 MobiDBLite consensus disorder prediction 1 145 - -
Car08g00942 525 MobiDBLite consensus disorder prediction 429 456 - -
Car08g00942 525 SUPERFAMILY RNA-binding domain, RBD 187 295 IPR035979 GO:0003676
Car08g00942 525 MobiDBLite consensus disorder prediction 54 68 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00942 197 386 Eukaryotic Initiation Factors Gene Family AT1G22760 26.263 9.44e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00942 K14837 - gmx:100809622 610.142