Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00940 ATGGGTAGGTCACCTTGTTGTGATGAGATTGGTGTAAAGAAAGGGCCATGGACAGAAGAAGAAGATGAGAAGTTGATTGATTATATCAACAAACATGGCCATGGAAATTGGGGATCACTGTCAAAGAGGGCAGGTTTGAATAGGTGTGGCAAGAGTTGTAGGCTAAGGTGGACAAATTATTTAAGGCCTGATATTAAGAGAGGGAAATTCACTGATGAAGAGGAGAGAATTATCATCAACCTTCATTCAGTTCTTGGAAACAAGTGGTCGAAGATTGCAACCCATCTTCCAGGACGAACAGATAATGAGATAAAGAATTTTTGGAACACAAACATTAGGAAAAAACTCCTCAAAATGGGAATTGACCCAGAAACTCATAAGCCTAGAACTGACTATAATCACCTCATGAGTCTTTCAAACTTACTTGGCATGTCAAATATAGGCACTGCTTTTGGCAACAACCCTCTTGGCTTACATCAAGATATCACTCACCTAGCCAAAATTCAATTGCTTCAAAATATGTTACAAATTATGAACACAAACAATTCATTTGTAAACATGAGTAACCCTTATAACCCTTTAGGCAATAATATTCCTAGCCTCAATCCATTCAATATGTTTTTGAGTGGAACAAACACAATTCAAACTAAGGAGGAATATGCTATGTCTAGCTTATACTCTAATGGACAAAGTGAATTATCTCAGCAGGCTGTTTCAATAGGTGGATTAAATCTACAAGAGATTGATTATAGCAAAATGAAGAGCATTTCATGTGAAAATCGAGAAGAAATTCCACTTCCTTCATTGGTTGCTTCCTCTCCAAGAAAAGGAACATTCAAGCAAATAGAAAGTGGTTGTGACAAAGCTCAAACTTCCAATAACACAATCTTTGATGATTGGGAGAAGTTTCTTGATGATGAATCAAATGGCTCCTATTGGAAAGAACTTTTGGACTTGACTTCCACTTCTGCGTCACCAATTTCGTGGTAG 990 0.3737 MGRSPCCDEIGVKKGPWTEEEDEKLIDYINKHGHGNWGSLSKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTDEEERIIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTNIRKKLLKMGIDPETHKPRTDYNHLMSLSNLLGMSNIGTAFGNNPLGLHQDITHLAKIQLLQNMLQIMNTNNSFVNMSNPYNPLGNNIPSLNPFNMFLSGTNTIQTKEEYAMSSLYSNGQSELSQQAVSIGGLNLQEIDYSKMKSISCENREEIPLPSLVASSPRKGTFKQIESGCDKAQTSNNTIFDDWEKFLDDESNGSYWKELLDLTSTSASPISW 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00940 329 CDD SANT 69 112 IPR001005 -
Car08g00940 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car08g00940 329 CDD SANT 16 61 IPR001005 -
Car08g00940 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car08g00940 329 SMART sant 13 63 IPR001005 -
Car08g00940 329 SMART sant 66 114 IPR001005 -
Car08g00940 329 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Car08g00940 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car08g00940 329 PANTHER MYB TRANSCRIPTION FACTOR 1 320 - -
Car08g00940 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 320 - -
Car08g00940 329 Gene3D - 69 135 - -
Car08g00940 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car08g00940 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car08g00940 329 Gene3D - 13 66 - -
Car08g00940 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00940 Car-Chr8 8635878 8638199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00940 1 318 MYB Transcription Factor Family AT5G16770 47.059 9.63e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car08g00940 Myb_DNA-binding 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00940 K09422 - gmx:778082 438.343