Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00938 ATGGAATCTAAGGAAAGTGGTGAAGAGAGAAAAAAAGAACACAAAGTTCCTTTGTTAAAGCTTTTTACTTTTGCTGACTCTTATGACTATGTTTTAATGTTCATTGGATCTATTGGAGCATGTATTCATGGTGCTTCTGTTCCTGTTTTCTTTATCTTCTTTGGAAAGTTGATTAATGTTATTGGCTTGGCTTATCTTTTTCCTAAGGAAGCCTCTCATGAAGTTGCAAAGTACTCAATGGATTTTGTGTATCTAAGTATAGCAATATTATTTTCATCTTGGACAGAGGTAGCTTGTTGGATGCATACTGGAGAAAGACAAGCAGCAAAGATGAGAATGGCTTATTTAAAATCGATGTTGAATCAAGATATAAGTCTTTTTGATACTGAGGCATCAACTGGAGAAGTTATTTCTGCAATTACAAGTGACATTATTATTGTTCAAGATGCTCTGTCTGAGAAGGTAGGGAACTTCATGCATTACATAAGCCGATTTATAGCAGGGTTTACAATTGGGTTTGTGAGAGTGTGGCAGATTAGTTTAGTTACACTTTCAATTGTTCCCTTAATTGCCCTTGCTGGAGGTCTTTATGCATATGTCACTATTGGCCTTATTGCTAAAGTTCGAAAATCATATGTCAAGGCTGGTGAAATCGCTGAAGAGGTGATAGGCAATGTTAGAACGGTACATGCATTTGCAGGAGAAGAAAAAGCAGTAAGATCATATAAAGCAGCTCTTTTGAACACTTATATATACGGTAGAAAAGCTGGTTTGGCAAAGGGTCTTGGATTGGGCTCAATGCATTGTGTTCTGTTTCTATCTTGGGCTTTGCTTGTTTGGTTCACTAGTGTTGTTGTTCACAAGAAAATTGCTAATGGTGGAGAGTCTTTCACTACCATGCTTAATGTTGTAATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATCTCAGCATTTATCAGAGCAAAAGCAGCAGCTTATCCAATTTTTGAGATGATAGAGAGGGATACAGTGAGCAAAAAAAGCTCCAAAACCGGTCACAAACTAAGCAAATTGGAGGGGCATATCCAGTTTAAGGATGTCTGTTTCAGTTACCCGTCTCGCCCGGACATAGAAATCTTCAACAACTTCAATCTTGACATTCCTGCAGGGAAAATTATAGCCCTCGTGGGAGGTAGTGGTTCTGGAAAGAGCACTGTTGTATCATTGATTGAACGTTTTTATGAACCTATTTCTGGTCATATACTGTTAGACAAGAATGATATCAGGGAACTTGATCTCAAATGGCTTAGACAGCAAATTGGACTAGTTAATCAAGAACCTGCACTTTTTGCTACAAGCATCAAGGAGAATATTTTGTATGGAAAAGATGATGCTACTCTTGAAGAACTAAAACGCGCTGTAAAGCTTTCAGATGCTCAGTCTTTCATCAACAATCTTCCTGATAGATTAGATACTCAGGTTGGTGAGAGAGGTATACAACTATCAGGTGGACAGAAGCAAAGGATTGCAATATCTCGCGCAATCGTGAAGAATCCATCGGTCCTTTTATTGGATGAGGCAACTAGTGCTTTGGATGCTGAGTCTGAGAAGAGTGTACAGGAGGCTCTTGATCGCGTCATGGTCGGTAGAACAACTGTTGTAATTGCACACAGACTTTCTACTATCAGGAATGCAGATGTGATAGCTGTTGTACAAGGAGGGAGGATTGTGGAGACCGGTAACCATGAAGAACTCATGTCTAATCCAACTAGTGTATATGCATCTCTTGTTCAACTTCAAGGGGCTACTTCTTTGCAACGCCTTCCCTCGGTTGGTCCTAGCTTGGGACAACAATCAAGCATAAACTATTCAAGAGAATTATCGCGTACAACAAGCATTGGTGGTAGTTTTCGATCAGACAAAGACTCGTTAGGCCGGGTTTGTGGTGATGATGGAGAGAAGGGAAGCAAGTCAAAGCATGTTTCAGCCAAAAGACTATACTCTATGGTTGGTCCTGACTGGCCTTATGGAGTTTTTGGGACCTTATGTGCCTTCATTGCTGGAGCACAAATGCCACTTTTTGCACTTGGAATCTCTCATGCTCTTGTATCATACTATATGGACTGGGATACAACTCGTCATGAAGTTAAAAAAATTGCTTTCCTGTTCTGTGGAGCTGCAGTTGTAACTATCACTGTTCATGCCATTGAACATCTCTTTTTTGGAATCATGGGCGAGCGACTTACGCTTCGTGTCAGAGAAAAGATGTTTACTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACCACCAACACAAGTTCTATGCTTTCATCGCGTTTAGAGAGTGATGCAACTTTATTACGAACAATAGTTGTTGATCGATCGACGATTCTGTTACAGAATGTTGGTCTGGTTGTTGCTTCTTTTATTATTGCCTTCCTCTTGAACTGGAGAATAACACTTGTTGTCTTGGCCACATATCCATTGATTATTAGTGGTCACATTAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTAAGCAAAGCATATCTAAAAGCCAATATGCTTGCAGGCGAGGCCGTGAGCAATATACGCACCGTTGCCGCATTTTGTTCTGAAGAAAAAGTACTTGATCTTTATGCTAATGAGCTTGTTGGTCCTTCCAAACATTCATTTCAACGCGGTCAAATTGCCGGCATATTCTACGGCATTTCCCAGTTTTTTATTTTCTCTTCTTATGGCCTTGCCTTATGGTATGGATCTGTTTTGATGGGAAAAGAGCTTGCTAGCTTTAAATCAGTTATGAAATCATTTATGGTTTTAATTGTAACAGCACTTGCTATGGGAGAAACTTTGGCACTAGCACCAGATCTTTTGAAAGGGAACCAAATGGTTGCATCAGTTTTTGAAGTATTGGATAGAAAGTCAGGAATATCATGTGATACTGGTGAAGAGTTGAGGACAGTGGAAGGAACAATTGAGCTCAAAAGAATCAATTTCAGTTACCCTTCAAGGCCAGATGTGATTATTTTCAAGGATTTCAATCTAAGAGTTCCTTCAGGAAAAAGTGTTGCCTTAGTGGGACAAAGTGGTTCTGGTAAAAGTTCTGTGATCTCCCTTATACTCAGATATTATGATCCAATATCAGGAAAGGTGTTAATTGATGGAAAAGACATCACAACAATCAATCTAAAATCTCTAAGAAAACACATAGGTCTTGTGCAACAAGAACCAGCCCTATTCGCCACATCAATATATGAAAACATTCTGTATGGAAAAGAAGGTGCATCTGATTCAGAAGTAATTGAAGCAGCCAAGCTAGCAAATGCTCACACCTTCATAAGTGGTCTACCAGATGGATACTCAACAAAAGTAGGTGAAAGAGGTGTTCAACTATCTGGTGGACAAAGACAAAGGGTAGCCATAGCTAGAGCTGTTTTAAAAAACCCTGAAATCTTGCTACTAGATGAAGCAACAAGTGCACTAGATGTTGAATCAGAACGTGTGGTGCAACAAGCACTTGACAGATTAATGCAGAACAGAACAACTGTTATGGTGGCACATAGGTTGTCTACTATAAGAAATGCTGACCAAATTTCAGTTTTGCAAGATGGGAAGATTATTGAGCAAGGGACTCATTCAAGTCTTATAGAGAATAAACATGGACCATACTATAAATTAGTCAACCTTCAACAACAACAACACCATCAATCATAG 3714 0.3947 MESKESGEERKKEHKVPLLKLFTFADSYDYVLMFIGSIGACIHGASVPVFFIFFGKLINVIGLAYLFPKEASHEVAKYSMDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKSYVKAGEIAEEVIGNVRTVHAFAGEEKAVRSYKAALLNTYIYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKKIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKKSSKTGHKLSKLEGHIQFKDVCFSYPSRPDIEIFNNFNLDIPAGKIIALVGGSGSGKSTVVSLIERFYEPISGHILLDKNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLDTQVGERGIQLSGGQKQRIAISRAIVKNPSVLLLDEATSALDAESEKSVQEALDRVMVGRTTVVIAHRLSTIRNADVIAVVQGGRIVETGNHEELMSNPTSVYASLVQLQGATSLQRLPSVGPSLGQQSSINYSRELSRTTSIGGSFRSDKDSLGRVCGDDGEKGSKSKHVSAKRLYSMVGPDWPYGVFGTLCAFIAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGAAVVTITVHAIEHLFFGIMGERLTLRVREKMFTAILKNEIGWFDDTTNTSSMLSSRLESDATLLRTIVVDRSTILLQNVGLVVASFIIAFLLNWRITLVVLATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVGPSKHSFQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVLDRKSGISCDTGEELRTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPSGKSVALVGQSGSGKSSVISLILRYYDPISGKVLIDGKDITTINLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHTFISGLPDGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKHGPYYKLVNLQQQQHHQS 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00938 1237 CDD ABC_6TM_Pgp_ABCB1_D2_like 662 977 - -
Car08g00938 1237 CDD ABC_MTABC3_MDL1_MDL2 992 1230 - -
Car08g00938 1237 Gene3D - 355 621 IPR027417 -
Car08g00938 1237 Pfam ABC transporter transmembrane region 33 305 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g00938 1237 Pfam ABC transporter transmembrane region 674 945 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g00938 1237 SUPERFAMILY ABC transporter transmembrane region 654 973 IPR036640 GO:0005524|GO:0016021
Car08g00938 1237 CDD ABC_MTABC3_MDL1_MDL2 357 595 - -
Car08g00938 1237 SMART AAA_5 384 570 IPR003593 -
Car08g00938 1237 SMART AAA_5 1019 1205 IPR003593 -
Car08g00938 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 595 IPR027417 -
Car08g00938 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1228 IPR003439 GO:0005524
Car08g00938 1237 SUPERFAMILY ABC transporter transmembrane region 21 327 IPR036640 GO:0005524|GO:0016021
Car08g00938 1237 ProSitePatterns ABC transporters family signature. 1131 1145 IPR017871 GO:0005524
Car08g00938 1237 Pfam ABC transporter 376 524 IPR003439 GO:0005524
Car08g00938 1237 Pfam ABC transporter 1011 1159 IPR003439 GO:0005524
Car08g00938 1237 Gene3D ABC transporter type 1, transmembrane domain 81 968 IPR036640 GO:0005524|GO:0016021
Car08g00938 1237 ProSitePatterns ABC transporters family signature. 496 510 IPR017871 GO:0005524
Car08g00938 1237 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 1233 IPR039421 -
Car08g00938 1237 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 11 1233 - -
Car08g00938 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 673 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g00938 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g00938 1237 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 330 - -
Car08g00938 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 985 1230 IPR027417 -
Car08g00938 1237 Gene3D - 983 1237 IPR027417 -
Car08g00938 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 357 593 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00938 Car-Chr8 8580455 8591458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00938 8 1236 Calmodulin-binding Proteins AT2G36910 50.080 0.0 1212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00938 K05658 - gmx:100819045 2175.21