Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00936 ATGAATGGGAGACAGCACCGTCACCAATCTTCCGTCACTGGAAAGCCACCGCAACATCATCGAGCCAAACTAAAATTCCGCTACGTCAACAAATCCGAACTCATTTCTTCACCTAACTCTGTGGCGGTTGAAGAACGAGTTTCCTCTGAGGTCGTTGATGTCAACAACAACAACACCGTTGATGACGTGGCTGGTTCAAGCGAGTTTAAAGAAGGGGATTATGAtgatggtgatattgatattattatggataataggtttgatgagttgttaagtgatattCAAGAACCTCAATTGTCTCAAGAACAGATCACAATCAATGATCAATTGCAGCAAGATGAGTTACTTGTGATGGAGTCAATTTACGGAGAAAACGTTTTCAGCCTTGATACATGGAAAGGCTTGCGTTGCTTTCAGATACATATAAACATTGATACTTTGGATGAAATAGGCATTACTGCTAAGGTGAACTCTGTTAACGAATCTGAGACTCTAAGCAGTAATTCAGATGATTTCTTATACTCTTTCAAAGTTCAATATCTTCCACCAATTATTTTGACGTGTTTATTACCTAAGTCATATCCGAGTCACCAACCGCCTATATTTACAATCTCTGTTAAGTGGTTGGAATCTGCGAAGATTTTAAGTTTATGTTCCGAGTTGGATTCAATATGGACAGACCAACAAGGACAGGAAGTGATTTACCATTGGGTAGAATGGTTACACAGCTCTTCTCTTTCTCATCTGGGATTTGATAAAGAGATTAGACTAGGTCCTTATGGAGTAAATCGTGTTGCGGATGCGCGTGTGGTTTCGGGAATTGGATGCATTGACGTTGATATTCCTTTTTTACAAAGTTATAACAATGAGAAGCGACATCAGAACTTCCTTAAAGAATTGCATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACCGAATTTATCCAGTTACCATGTAAGCATTTCTTCTGCCGCAAATGCTTGCAGACCTTTACTCAGATACATGTAAAAGAAGGTAACATTAGTAATCTTCAATGTCTTGATGCAAAATGCAAGGTTATGATTCCACCTGCCATTTTGAAACATTTTCTGGGTGACGAAGATTATGAACGTTGGGAATCCATGATGTTAGACAAAACACTTGCATCAATGTCTGATGTTGTTTATTGCCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAACATGCTCAGTGCCCAAAATGCTTTTTTAGCTTTTGTACCCTTTGCAGGGAGCGACGCCATGTTGGTATCGCATGTATGACACTAGATATGAAGCTTCAATTTCTGCAGGAACGTCAAAATTCATCTCGATTAAAGGAAGATCAAAGGCGTAATGAACTTGAAAAGATCAATGAAATGCTCAGTATGAAAGAAATTCAGCGCGATTCCAAGTTTTGTCCTTCTTGTCACATGGCTATTTCTCGTACCGAAGGTTGTAACAAAATGAAGTGTGGCAATTGTGAACAGTACTTCTGTTACCGCTGCAACAAAGCACTTGATTCATCAGACCCATATGGACATTTCAGGGATGGGTCGTGTGAATTGTTCCCCCGAGAAATGGTTGACAACTGGCAAGAGCGCATAAATCCTCGCCAAGTATTGCAACAAGTACATGCGGAAATCTTTCACCTCGGTGGCTCAGCATGTCCTAATTGTCGTCAATTTAATGTAAAGATGGGAAACAATAATCACATGTTATGTTGGGCATGTCAGAGCCATTACTGCTACTTATGCAATGAGATCGTCAGGCGTGGCACTAGGCATTATGGACCAAAAGGTTGCAAACAGCACAGTGAGGGATAG 1833 0.3928 MNGRQHRHQSSVTGKPPQHHRAKLKFRYVNKSELISSPNSVAVEERVSSEVVDVNNNNTVDDVAGSSEFKEGDYDDGDIDIIMDNRFDELLSDIQEPQLSQEQITINDQLQQDELLVMESIYGENVFSLDTWKGLRCFQIHINIDTLDEIGITAKVNSVNESETLSSNSDDFLYSFKVQYLPPIILTCLLPKSYPSHQPPIFTISVKWLESAKILSLCSELDSIWTDQQGQEVIYHWVEWLHSSSLSHLGFDKEIRLGPYGVNRVADARVVSGIGCIDVDIPFLQSYNNEKRHQNFLKELHECCICYSEYPGTEFIQLPCKHFFCRKCLQTFTQIHVKEGNISNLQCLDAKCKVMIPPAILKHFLGDEDYERWESMMLDKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCFFSFCTLCRERRHVGIACMTLDMKLQFLQERQNSSRLKEDQRRNELEKINEMLSMKEIQRDSKFCPSCHMAISRTEGCNKMKCGNCEQYFCYRCNKALDSSDPYGHFRDGSCELFPREMVDNWQERINPRQVLQQVHAEIFHLGGSACPNCRQFNVKMGNNNHMLCWACQSHYCYLCNEIVRRGTRHYGPKGCKQHSEG 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00936 610 SMART RWD2001b 113 248 IPR006575 GO:0005515
Car08g00936 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 386 IPR013083 -
Car08g00936 610 Gene3D - 447 554 - -
Car08g00936 610 Gene3D Ubiquitin Conjugating Enzyme 99 250 IPR016135 -
Car08g00936 610 ProSiteProfiles TRIAD supradomain profile. 299 529 IPR044066 -
Car08g00936 610 SMART ring_2 303 350 IPR001841 -
Car08g00936 610 SMART ring_2 559 588 IPR001841 -
Car08g00936 610 SMART ring_2 391 479 IPR001841 -
Car08g00936 610 MobiDBLite consensus disorder prediction 1 16 - -
Car08g00936 610 ProSiteProfiles RWD domain profile. 113 248 IPR006575 GO:0005515
Car08g00936 610 SUPERFAMILY RING/U-box 371 434 - -
Car08g00936 610 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 89 555 IPR031127 GO:0004842|GO:0016567
Car08g00936 610 SUPERFAMILY RING/U-box 552 607 - -
Car08g00936 610 ProSiteProfiles Zinc finger RING-type profile. 303 347 IPR001841 -
Car08g00936 610 SUPERFAMILY RING/U-box 298 382 - -
Car08g00936 610 SMART ibrneu5 458 523 IPR002867 -
Car08g00936 610 SMART ibrneu5 371 429 IPR002867 -
Car08g00936 610 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 89 555 - -
Car08g00936 610 SUPERFAMILY RING/U-box 463 518 - -
Car08g00936 610 MobiDBLite consensus disorder prediction 1 21 - -
Car08g00936 610 ProSitePatterns Zinc finger RING-type signature. 320 329 IPR017907 -
Car08g00936 610 SUPERFAMILY UBC-like 107 243 IPR016135 -
Car08g00936 610 Pfam RWD domain 109 243 IPR006575 GO:0005515
Car08g00936 610 Pfam IBR domain, a half RING-finger domain 465 509 IPR002867 -
Car08g00936 610 Pfam IBR domain, a half RING-finger domain 371 429 IPR002867 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00936 298 531 ARIADNE family AT3G27710 22.822 5.70e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00936 K11971 - gmx:100500662 921.768