Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00935 ATGGACGGAGCGAGCGGCAGTAGTGCTGGCGGAGAAGGAACGTCAGCCCAATTACcggtgccgacaccgatttcaaacgcgaacgcgccgccgccgtttttgagcaagacttatgacatggtggatgatcctttgacggatgccgtggtttcttggagcgcaacgaataacagttttgttgtttgggacccacctgaattcgctagggatcttttgcctaagtacttcaagcataacaacttctcaagtttcgttagacagttgaatacatatGGTTTCAGGAAGGTCGATCCAGATCGCTGGGAATTTGCAAACGAGGGCTTTTTGAGGGGTCAAAAGCACTTGCTTAAGAGTATAACTCGACGAAAACCTGCCCATGGTCATAATAATCAACAGGCTCAGCAACCGCATGGACAGAGTTCATCGGTAGGGGCATGTGTAGAAGTAGGGAAATTTGGGCTCGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAGAATGTTCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAAGCCACTGATAGCCAGATGCAAGGAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGGCAACAGCAAATGATGTCATTCCTTGCTAAAGCTGTCCAGAGCCCCGGCTTCTTTGCTCAGTTTGTGCAACAGCAAAATGACAGCAATAGGCGCATAACCGAAGTCAGCAAAAAGCGTCGTCTCAAGCAAGAAGGTATTGCTGAAACAACTGAGCGAGCTTCCCCTCCTGATGGACAAATTGTTAAATATCAACCTTTGATGAACGAAGCAGCAAAATCAATGCTAAGGCAGATCATGAAATGGGATACTTCCCGTGTAGAATCTTTCAACAAAAACCCCGATAATTACTTGATTCGTGACGGTACATCACCATCCAATGCAATGGACAGTAGTAGCTCTTCAAGCTGGAATTCTGGAGTAACTCTTCAAGAGGTTCCTCCATCTTCAGTGCAGTCTTCTCAAATTCCATCTGCAACGGGGACTCAAGGACATGTTCCATCAGCAGAAAAACCAGATATTCTATCTGTACCTCAAGCTGCGGCATCTCAAAATGTTATGAACGATGGAGCACATACAGCACCCTCTATCCCGAATTCTCAAGCAGATGTTGGGATGCCTGATATACCTTCAATACCAGAGATTGTGCCAAGGAGTATTCTTGATATTGCTGAAGACAGTTATATGGCTTCTGAGACAGATGAGGGATTTATGGGAGTCGACGGGTCATTTCCCATTGATTTTGAAGGTCTTTCACCCGGTGCAGACATTGATGATTTGTTAAGCAATCCTTCTATTTGGGATGATCTTTTGCAAACTCCAGTTCCGGAGGATATTGTGACCAATGTTGACGAAATATGCAATGGGAATGAGGTGCAGCCGACAGAAAATGGATGGGACAAAACTCAGCACCTGGATCAGCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATAGAGAAAGAATATAA 1503 0.3892 MDGASGSSAGGEGTSAQLPVPTPISNANAPPPFLSKTYDMVDDPLTDAVVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHNNQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDSQMQGMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVSKKRRLKQEGIAETTERASPPDGQIVKYQPLMNEAAKSMLRQIMKWDTSRVESFNKNPDNYLIRDGTSPSNAMDSSSSSSWNSGVTLQEVPPSSVQSSQIPSATGTQGHVPSAEKPDILSVPQAAASQNVMNDGAHTAPSIPNSQADVGMPDIPSIPEIVPRSILDIAEDSYMASETDEGFMGVDGSFPIDFEGLSPGADIDDLLSNPSIWDDLLQTPVPEDIVTNVDEICNGNEVQPTENGWDKTQHLDQLTEQMGLLSSDRERI 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00935 500 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00935 500 Gene3D - 25 123 IPR036388 -
Car08g00935 500 MobiDBLite consensus disorder prediction 288 343 - -
Car08g00935 500 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00935 500 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00935 500 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00935 500 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00935 500 MobiDBLite consensus disorder prediction 125 142 - -
Car08g00935 500 MobiDBLite consensus disorder prediction 1 28 - -
Car08g00935 500 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00935 500 SUPERFAMILY "Winged helix" DNA-binding domain 28 122 IPR036390 -
Car08g00935 500 MobiDBLite consensus disorder prediction 1 23 - -
Car08g00935 500 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 8 486 - -
Car08g00935 500 Coils Coil 151 178 - -
Car08g00935 500 MobiDBLite consensus disorder prediction 123 142 - -
Car08g00935 500 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 486 IPR027725 -
Car08g00935 500 MobiDBLite consensus disorder prediction 233 257 - -
Car08g00935 500 MobiDBLite consensus disorder prediction 288 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00935 Car-Chr8 8535604 8540717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00935 1 494 HSF AT1G32330 53.229 6.48e-164 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car08g00935 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00935 K09419 - gmx:100794897 766.533