Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00933 ATGAGCTTTCAAGACTTAGAAGCCGGTCGCCGCAACCTTACCAACGGCAAGCAAGACCCGACGCATGCGGTGGCTTCCGGCGTATTTCAGATCAACACCGCTGTCTCCACTTTTCAGAGACTCGTCAACACCCTCGGAACCCCTAAAGACACGCCCGAACTCCGCGACAAACTCCACAAGACGAGACTTCATATTGGACAATTGGTGAAGGATACGTCGGATAAACTTAAACAAGCTAGTGAAATTGATCATCATGTTGATGCTAATGCAACCAAGAAGATAGCAGATGCTAAATTGGCGAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCAGCTGAGAGGGAGACAGCTTACCCTCCTTTTGTTCCGCAAGCAGTTCAGCCATCCAGCTATACAGTCAGTGAAGTAGGTGATATTTCTGATAAAAGTCAAGAACAGCATGCACTTCTAGTGGAGTCCAGAAGACAAGAGGTAATATCCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAACAAGGCATTCAAGAAATCCAGCAGCAGATTGGTGAAGTAAATGAGATCTTCAAAGATCTTGCTGTTCTTGTTCATGAGCAAGGAGCAATGATCGATGATATTGGGTCCAACATTGAGCATTCCCATGAAACCACTGCCCAAGCAAAGTCACAACTTGTGAAAGCTTCAAAGACACAAAGATCAAGTTCATCTCTGGTGTGCTTGCTTCTGGTGATATTTGGAGTTGTGCTTCTCATCATCTTCATTGTTGTTGCTGTTTAG 807 0.4436 MSFQDLEAGRRNLTNGKQDPTHAVASGVFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSDKLKQASEIDHHVDANATKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYPPFVPQAVQPSSYTVSEVGDISDKSQEQHALLVESRRQEVISLDNEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHETTAQAKSQLVKASKTQRSSSSLVCLLLVIFGVVLLIIFIVVAV 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00933 268 CDD SNARE_Qa 195 236 - -
Car08g00933 268 MobiDBLite consensus disorder prediction 1 20 - -
Car08g00933 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
Car08g00933 268 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car08g00933 268 SMART tSNARE_6 170 237 IPR000727 -
Car08g00933 268 SMART SynN_4 8 122 IPR006011 GO:0016020
Car08g00933 268 CDD SynN 23 152 IPR006011 GO:0016020
Car08g00933 268 Pfam SNARE domain 212 262 IPR000727 -
Car08g00933 268 Gene3D - 14 126 - -
Car08g00933 268 PANTHER SYNTAXIN 8 267 IPR045242 -
Car08g00933 268 Gene3D - 168 268 - -
Car08g00933 268 PANTHER SYNTAXIN OF PLANTS PROTEIN 8 267 - -
Car08g00933 268 SUPERFAMILY t-snare proteins 19 230 IPR010989 GO:0016020|GO:0016192
Car08g00933 268 Pfam Syntaxin-like protein 25 125 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00933 Car-Chr8 8513756 8517899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00933 1 256 SNARE and Associated Proteins AT5G46860 74.231 1.12e-137 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00933 K08488 - gmx:100810149 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00933 08 8513756 8517899 Car07g01926 07 22013419 22018371 PCT